Mereu, Elisabetta

SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes

Elosua-Bayes, M., Nieto, P., Mereu, E., Gut, I., & Heyn, H. (2021) · Nucleic Acids Research

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 732

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

Mereu, E., Lafzi, A., Moutinho, C., Ziegenhain, C., McCarthy, D. J., Álvarez-Varela, A., Batlle, E., Sagar, Grün, D., Lau, J. K., et al. (2020) · Nature Biotechnology

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 499

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

Holland, C. H., Tanevski, J., Perales-Patón, J., Gleixner, J., Kumar, M. P., Mereu, E., Joughin, B. A., Stegle, O., Lauffenburger, D. A., Heyn, H., et al. (2020) · Genome Biology

Single-cell and spatial transcriptomicsBioinformatics and Genomic Networks

Cited by 323

The Human Microglia Atlas (HuMicA) unravels changes in disease-associated microglia subsets across neurodegenerative conditions

Martins-Ferreira, R., Calafell-Segura, J., Leal, B., Rodríguez-Ubreva, J., Martínez-Saez, E., Mereu, E., Pinho E Costa, P., Laguna, A., & Ballestar, E. (2025) · Nature Communications

Neuroinflammation and Neurodegeneration MechanismsSingle-cell and spatial transcriptomics

Cited by 123

bigSCale: an analytical framework for big-scale single-cell data

Iacono, G., Mereu, E., Guillaumet-Adkins, A., Corominas, R., Cuscó, I., Rodríguez-Esteban, G., Gut, M., Pérez-Jurado, L. A., Gut, I., & Heyn, H. (2018) · Genome Research

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 79