Zheng, Mingyue

TransformerCPI: improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments

Chen, L., Tan, X., Wang, D., Zhong, F., Liu, X., Yang, T., Luo, X., Chen, K., Jiang, H., & Zheng, M. (2020) · Bioinformatics

Computational Drug Discovery MethodsMachine Learning in Bioinformatics

Cited by 607

Discovery of Highly Potent, Selective, and Orally Efficacious p300/CBP Histone Acetyltransferases Inhibitors

Yang, Y., Zhang, R., Li, Z., Mei, L., Wan, S., Ding, H., Chen, Z., Xing, J., Feng, H., Han, J., et al. (2020) · Journal of Medicinal Chemistry

Histone Deacetylase Inhibitors ResearchProtein Degradation and Inhibitors

Cited by 132

SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction

Cao, D., Chen, M., Zhang, R., Yu, J., Jiang, X., Fan, Z., Zhang, W., & Zheng, M. (2023) · Nature Methods

Computational Drug Discovery MethodsProtein Structure and Dynamics

Cited by 106

SurfDock is a surface-informed diffusion generative model for reliable and accurate protein–ligand complex prediction

Cao, D., Chen, M., Zhang, R., Wang, Z., Huang, M., Yu, J., Jiang, X., Fan, Z., Zhang, W., Zhou, H., et al. (2025) · Nature Methods

Computational Drug Discovery MethodsProtein Structure and Dynamics

Cited by 106

Discovery of the First-in-Class Agonist-Based SOS1 PROTACs Effective in Human Cancer Cells Harboring Various KRAS Mutations

Zhou, C., Fan, Z., Zhou, Z., Li, Y., Cui, R., Liu, C., Zhou, G., Diao, X., Jiang, H., Zheng, M., et al. (2022) · Journal of Medicinal Chemistry

Protein Degradation and InhibitorsProtein Kinase Regulation and GTPase Signaling

Cited by 94

Cytoplasmic DNA sensing by KU complex in aged CD4(+) T cell potentiates T cell activation and aging-related autoimmune inflammation

Wang, Y., Fu, Z., Li, X., Liang, Y., Pei, S., Hao, S., Zhu, Q., Yu, T., Pei, Y., Yuan, J., et al. (2021) · Immunity

T-cell and B-cell ImmunologyDNA Repair Mechanisms

Cited by 84

Uncertainty quantification: Can we trust artificial intelligence in drug discovery?

Yu, J., Wang, D., & Zheng, M. (2022) · iScience

Computational Drug Discovery MethodsMachine Learning in Materials Science

Cited by 59

AST1306, A Novel Irreversible Inhibitor of the Epidermal Growth Factor Receptor 1 and 2, Exhibits Antitumor Activity Both In Vitro and In Vivo

Xie, H., Lin, L., Tong, L., Jiang, Y., Zheng, M., Chen, Z., Jiang, X., Zhang, X., Ren, X., Qu, W., et al. (2011) · PLoS ONE

HER2/EGFR in Cancer ResearchLung Cancer Treatments and Mutations

Cited by 48

Design, Synthesis, and Biological Evaluation of Potent and Selective PROTAC Degraders of Oncogenic KRAS G12D

Zhou, C., Fan, Z., Gu, Y., Ge, Z., Tao, Z., Cui, R., Li, Y., Zhou, G., Huo, R., Gao, M., et al. (2024) · Journal of Medicinal Chemistry

Protein Degradation and InhibitorsChemical Synthesis and Analysis

Cited by 45

Estimation of acute oral toxicity in rat using local lazy learning

Lu, J., Peng, J., Wang, J., Shen, Q., Bi, Y., Gong, L., Zheng, M., Luo, X., Zhu, W., Jiang, H., et al. (2014) · Journal of Cheminformatics

Computational Drug Discovery MethodsAnimal testing and alternatives

Cited by 42

Characterization of covalent binding of tyrosine kinase inhibitors to plasma proteins

Liu, X., Feng, D., Zheng, M., Cui, Y., & Zhong, D. (2020) · Drug Metabolism and Pharmacokinetics

Protein Interaction Studies and Fluorescence AnalysisPharmacogenetics and Drug Metabolism

Cited by 32

Eugenol restrains abdominal aortic aneurysm progression with down‐regulations on NF‐κB and COX‐2

Zhai, Z., Zhang, X., Ding, Y., Huang, Z., Li, Q., Zheng, M., Cho, K., Dong, Z., Fu, W., Chen, Z., et al. (2022) · Phytotherapy Research

Aortic aneurysm repair treatmentsAortic Disease and Treatment Approaches

Cited by 23

Discovery of a novel eunicellane synthase unveils the relationship between stereochemistry and flexibility among eunicellanes

Li, J., Chen, B., Fu, Z., Mao, J., Liu, L., Chen, X., Zheng, M., Wang, C.-Y., Wang, C., Guo, Y.-W., et al. (2023) · Nature Communications

Plant biochemistry and biosynthesisMicrobial Natural Products and Biosynthesis

Cited by 20

Discovery of a terpene synthase synthesizing a nearly non-flexible eunicellane reveals the basis of flexibility

Li, J., Chen, B., Fu, Z., Mao, J., Liu, L., Chen, X., Zheng, M., Wang, C.-Y., Wang, C., Guo, Y.-W., et al. (2024) · Nature Communications

Plant biochemistry and biosynthesisMicrobial Natural Products and Biosynthesis

Cited by 19