Shen, Hong-Bin

Leveraging Scaffold Information to Predict Protein-ligand Binding Affinity with an Empirical Graph Neural Network

Xia, C., Feng, S.-H., Xia, Y., Pan, X., & Shen, H.-B. (2022) · Briefings in Bioinformatics

Computational Drug Discovery MethodsMachine Learning in Bioinformatics

Cited by 30

Leveraging scaffold information to predict protein–ligand binding affinity with an empirical graph neural network

Xia, C., Feng, S.-H., Xia, Y., Pan, X., & Shen, H.-B. (2023) · Briefings in Bioinformatics

Computational Drug Discovery MethodsMachine Learning in Bioinformatics

Cited by 30

CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks

Feng, S.-H., Xia, C.-Q., & Shen, H.-B. (2022) · Bioinformatics

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 21

Discovering the nuclear localization signal universe through a deep learning model with interpretable attention units

Li, Y.-F., Pan, X., & Shen, H.-B. (2025) · Patterns

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 18

Discovering nuclear localization signal universe through a novel deep learning model with interpretable attention units

Li, Y.-F., Pan, X., & Shen, H.-B. (2024) · Patterns

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 17

High-accuracy protein model quality assessment using attention graph neural networks

Zhang, P., Xia, C., & Shen, H.-B. (2023) · Briefings in Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 9

High-accuracy protein model quality assessment using attention graph neural networks

Zhang, P., Xia, C., & Shen, H.-B. (2022) · Briefings in Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 9

Ab-initio amino acid sequence design from protein text description with ProtDAT

Guo, X.-Y., Li, Y.-F., Liu, Y., Pan, X., & Shen, H.-B. (2025) · Nature Communications

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 3

Structure-alignment-driven cross-graph modeling for functional RNA design

Wang, S., Wang, J., Liu, X., Zhu, W., Huang, J., Xue, Y., Yan, J., Shen, H.-B., Song, J., & Pan, X. (2026) · Nature Computational Science

RNA and protein synthesis mechanismsProtein Structure and Dynamics

Cited by 2