Xu, Zhenjiang Zech

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., et al. (2019) · Nature Biotechnology

Scientific Computing and Data ManagementGut microbiota and health

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Best practices for analysing microbiomes

Knight, R., Vrbanac, A., Taylor, B. C., Aksenov, A., Callewaert, C., Debelius, J., Gonzalez, A., Kosciolek, T., McCall, L.-I., McDonald, D., et al. (2018) · Nature Reviews Microbiology

Genomics and Phylogenetic StudiesGut microbiota and health

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Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism

Zarrinpar, A., Chaix, A., Xu, Z. Z., Chang, M. W., Marotz, C. A., Saghatelian, A., Knight, R., & Panda, S. (2018) · Nature Communications

Gut microbiota and healthGastrointestinal motility and disorders

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Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

Janssen, S., McDonald, D., Gonzalez, A., Navas-Molina, J. A., Jiang, L., Xu, Z. Z., Winker, K., Kado, D. M., Orwoll, E., Manary, M., et al. (2018) · mSystems

Genomics and Phylogenetic StudiesGut microbiota and health

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Dietary effects on human gut microbiome diversity

Xu, Z., & Knight, R. (2015) · British Journal Of Nutrition

Gut microbiota and healthNutritional Studies and Diet

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A Gut Microbiome Signature for Cirrhosis Due to Nonalcoholic Fatty Liver Disease

Caussy, C., Tripathi, A., Humphrey, G., Bassirian, S., Singh, S., Faulkner, C., Bettencourt, R., Rizo, E., Richards, L., Xu, Z. Z., et al. (2019) · Nature Communications

Gut microbiota and healthLiver Disease Diagnosis and Treatment

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Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

Huang, S., Haiminen, N., Carrieri, A.-P., Hu, R., Jiang, L., Parida, L., Russell, B., Allaband, C., Zarrinpar, A., Vázquez-Baeza, Y., et al. (2020) · mSystems

Gut microbiota and healthOral microbiology and periodontitis research

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Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor

Vockenhuber, M.-P., Sharma, C. M., Statt, M. G., Schmidt, D., Xu, Z., Dietrich, S., Liesegang, H., Mathews, D. H., & Suess, B. (2011) · RNA Biology

Bacterial Genetics and BiotechnologyMicrobial Natural Products and Biosynthesis

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