Nie, Qing

Inference and analysis of cell-cell communication using CellChat

Jin, S., Guerrero-Juarez, C. F., Zhang, L., Chang, I., Ramos, R., Kuan, C.-H., Myung, P., Plikus, M. V., & Nie, Q. (2021) · Nature Communications

Single-cell and spatial transcriptomicsBioinformatics and Genomic Networks

Cited by 8,409

DifferentialEquations.jl – A Performant and Feature-Rich Ecosystem for Solving Differential Equations in Julia

Rackauckas, C., & Nie, Q. (2017) · Journal of Open Research Software

Numerical Solvers for Ordinary Differential EquationsModeling and Simulation Systems

Cited by 1,636

CellChat for systematic analysis of cell–cell communication from single-cell transcriptomics

Jin, S., Plikus, M. V., & Nie, Q. (2025) · Nature Protocols

Single-cell and spatial transcriptomicsBioinformatics and Genomic Networks

Cited by 1,448

Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds

Guerrero-Juarez, C. F., Dedhia, P. H., Jin, S., Ruiz-Vega, R., Ma, D., Liu, Y., Yamaga, K., Shestova, O., Gay, D. L., Yang, Z., et al. (2019) · Nature Communications

Wound Healing and TreatmentsPlanarian Biology and Electrostimulation

Cited by 521

Single cell transcriptomics of human epidermis identifies basal stem cell transition states

Wang, S., Drummond, M. L., Guerrero-Juarez, C. F., Tarapore, E., MacLean, A. L., Stabell, A. R., Wu, S. C., Gutierrez, G., That, B. T., Benavente, C. A., et al. (2020) · Nature Communications

Hair Growth and DisordersSingle-cell and spatial transcriptomics

Cited by 218

The landscape of cell–cell communication through single-cell transcriptomics

Almet, A. A., Cang, Z., Jin, S., & Nie, Q. (2021) · Current Opinion in Systems Biology

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 197

Single-cell and spatial transcriptomics identify a macrophage population associated with skeletal muscle fibrosis

Coulis, G., Jaime, D., Guerrero-Juarez, C., Kastenschmidt, J. M., Farahat, P. K., Nguyen, Q., Pervolarakis, N., McLinden, K., Thurlow, L., Movahedi, S., et al. (2023) · Science Advances

Muscle Physiology and DisordersCardiac Fibrosis and Remodeling

Cited by 150

Single-cell transcriptomics of human-skin-equivalent organoids

Stabell, A. R., Lee, G. E., Jia, Y., Wong, K. N., Wang, S., Ling, J., Nguyen, S. D., Sen, G. L., Nie, Q., & Atwood, S. X. (2023) · Cell Reports

Single-cell and spatial transcriptomicsSkin and Cellular Biology Research

Cited by 30

Retinal polyunsaturated fatty acid supplementation reverses aging-related vision decline in mice

Gao, F., Tom, E., Rydz, C., Cho, W., Kolesnikov, A. V., Sha, Y., Papadam, A., Jafari, S., Joseph, A., Ahanchi, A., et al. (2025) · Science Translational Medicine

Fatty Acid Research and HealthRetinal Diseases and Treatments

Cited by 10