Holt, Kathryn E.

Performance of neural network basecalling tools for Oxford Nanopore sequencing

Wick, R. R., Judd, L. M., & Holt, K. E. (2019) · Genome Biology

Genomics and Phylogenetic StudiesNanopore and Nanochannel Transport Studies

Cited by 3,221

The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development

Teo, S. M., Mok, D., Pham, K., Kusel, M., Serralha, M., Troy, N., Holt, B. J., Hales, B. J., Walker, M. L., Hollams, E., et al. (2015) · Cell Host & Microbe

Asthma and respiratory diseasesGut microbiota and health

Cited by 953

Typhoid in Kenya Is Associated with a Dominant Multidrug-Resistant Salmonella enterica Serovar Typhi Haplotype That Is Also Widespread in Southeast Asia

Kariuki, S., Revathi, G., Kiiru, J., Mengo, D. M., Mwituria, J., Muyodi, J., Munyalo, A., Teo, Y. Y., Holt, K. E., Kingsley, R. A., et al. (2010) · Journal of Clinical Microbiology

Salmonella and Campylobacter epidemiologyAntibiotic Resistance in Bacteria

Cited by 158

An outpatient, ambulant-design, controlled human infection model using escalating doses of Salmonella Typhi challenge delivered in sodium bicarbonate solution

Waddington, C. S., Darton, T. C., Jones, C., Haworth, K., Peters, A., John, T., Thompson, B. A. V., Kerridge, S. A., Kingsley, R. A., Zhou, L., et al. (2014) · Clinical Infectious Diseases

Salmonella and Campylobacter epidemiologyBacterial Infections and Vaccines

Cited by 148

The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa

Park, S. E., Pham, D. T., Boinett, C., Wong, V. K., Pak, G. D., Panzner, U., Espinoza, L. M. C., von Kalckreuth, V., Im, J., Schütt-Gerowitt, H., et al. (2018) · Nature Communications

Salmonella and Campylobacter epidemiologyAntibiotic Resistance in Bacteria

Cited by 120

Silent spread of mobile colistin resistance gene mcr-9.1 on IncHI2 ‘superplasmids’ in clinical carbapenem-resistant Enterobacterales

Macesic, N., Blakeway, L. V., Stewart, J. D., Hawkey, J., Wyres, K. L., Judd, L. M., Wick, R. R., Jenney, A. W., Holt, K. E., & Peleg, A. Y. (2021) · Clinical Microbiology and Infection

Antibiotic Resistance in BacteriaAntibiotic Use and Resistance

Cited by 75

Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya

Kariuki, S., Dyson, Z. A., Mbae, C., Ngetich, R., Kavai, S. M., Wairimu, C., Anyona, S., Gitau, N., Onsare, R. S., Ongandi, B., et al. (2021) · eLife

Salmonella and Campylobacter epidemiologyBacterial Infections and Vaccines

Cited by 50

Correcting index databases improves metagenomic studies

Méric, G., Wick, R. R., Watts, S. C., Holt, K. E., & Inouye, M. (2019) · bioRxiv (Cold Spring Harbor Laboratory)

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 34

Multidrug-Resistant Salmonella enterica Serotype Typhi, Gulf of Guinea Region, Africa

Baltazar, M., Ngandjio, A., Holt, K. E., Lepillet, E., Pardos de la Gandara, M., Collard, J.-M., Bercion, R., Nzouankeu, A., Le Hello, S., Dougan, G., et al. (2015) · Emerging Infectious Diseases

Salmonella and Campylobacter epidemiologyAntibiotic Resistance in Bacteria

Cited by 26

High-level nitrofurantoin resistance in a clinical isolate of Klebsiella pneumoniae: a comparative genomics and metabolomics analysis

Hussein, M., Sun, Z., Hawkey, J., Allobawi, R., Judd, L. M., Carbone, V., Sharma, R., Thombare, V., Baker, M., Rao, G. G., et al. (2024) · mSystems

Antibiotic Resistance in BacteriaBacterial Genetics and Biotechnology

Cited by 14

Capsular specificity in temperate phages of Klebsiella pneumoniae is driven by diverse receptor-binding enzymes

Otwinowska, A., Koszucki, J., Panicker, V. R., Leconte, J., Olejniczak, S., Holt, K. E., Feil, E. J., Rocha, E. P. C., Smug, B., Maciejewska, B., et al. (2025) · PLoS Biology

Bacteriophages and microbial interactionsEscherichia coli research studies

Cited by 5

Capsular specificity in temperate phages of Klebsiella pneumoniae is driven by diverse receptor-binding enzymes

Otwinowska, A., Koszucki, J., Panicker, V. R., Leconte, J., Olejniczak, S., Holt, K. E., Feil, E. J., Rocha, E. P. C., Smug, B., Maciejewska, B., et al. (2026) · PLOS Biology

Bacteriophages and microbial interactionsEscherichia coli research studies

Cited by 5