Dong, Mingze

Spatial epigenome–transcriptome co-profiling of mammalian tissues

Zhang, D., Deng, Y., Kukanja, P., Agirre, E., Bartosovic, M., Dong, M., Ma, C., Ma, S., Su, G., Bao, S., et al. (2023) · Nature

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 483

Predicting cellular responses to perturbation across diverse contexts with State

Adduri, A. K., Gautam, D., Bevilacqua, B., Naghipourfar, M., Imran, A., Shah, R., Teyssier, N., Verma, R., Carpenter, C., Eraslan, B., et al. (2026) · Cell

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 100

Causal identification of single-cell experimental perturbation effects with CINEMA-OT

Dong, M., Wang, B., Wei, J., de O. Fonseca, A. H., Perry, C. J., Frey, A., Ouerghi, F., Foxman, E. F., Ishizuka, J. J., Dhodapkar, R. M., et al. (2023) · Nature Methods

Single-cell and spatial transcriptomicsAdvanced Causal Inference Techniques

Cited by 94

Advancing biological understanding of cellular senescence with computational multiomics

Li, S., Agudelo Garcia, P. A., Aliferis, C., Becich, M. J., Calyeca, J., Cosgrove, B. D., Elisseeff, J., Farzad, N., Fertig, E. J., Glass, C., et al. (2025) · Nature Genetics

Telomeres, Telomerase, and SenescenceSingle-cell and spatial transcriptomics

Cited by 40