Huang, Xuhui

Massively parallel de novo protein design for targeted therapeutics

Chevalier, A., Silva, D.-A., Rocklin, G. J., Hicks, D. R., Vergara, R., Murapa, P., Bernard, S. M., Zhang, L., Lam, K.-H., Yao, G., et al. (2017) · Nature

Protein Structure and DynamicsMonoclonal and Polyclonal Antibodies Research

Cited by 453

Blockade of EphA4 signaling ameliorates hippocampal synaptic dysfunctions in mouse models of Alzheimer’s disease

Fu, A. K. Y., Hung, K.-W., Huang, H., Gu, S., Shen, Y., Cheng, E. Y. L., Ip, F. C. F., Huang, X., Fu, W.-Y., & Ip, N. Y. (2014) · Proceedings of the National Academy of Sciences

Alzheimer's disease research and treatmentsNeuroscience and Neuropharmacology Research

Cited by 201

Dramatic Differences in Aggregation-Induced Emission and Supramolecular Polymerizability of Tetraphenylethene-Based Stereoisomers

Peng, H.-Q., Zheng, X., Han, T., Kwok, R. T. K., Lam, J. W. Y., Huang, X., & Tang, B. Z. (2017) · Journal of the American Chemical Society

Luminescence and Fluorescent MaterialsSupramolecular Chemistry and Complexes

Cited by 201

Dynamics of an Intrinsically Disordered Protein Reveal Metastable Conformations That Potentially Seed Aggregation

Qiao, Q., Bowman, G. R., & Huang, X. (2013) · Journal of the American Chemical Society

Protein Structure and DynamicsAlzheimer's disease research and treatments

Cited by 182

Structural Insight into RNA Hairpin Folding Intermediates

Bowman, G. R., Huang, X., Yao, Y., Sun, J., Carlsson, G., Guibas, L. J., & Pande, V. S. (2008) · Journal of the American Chemical Society

RNA and protein synthesis mechanismsProtein Structure and Dynamics

Cited by 101

Simulating the T-Jump-Triggered Unfolding Dynamics of trpzip2 Peptide and Its Time-Resolved IR and Two-Dimensional IR Signals Using the Markov State Model Approach

Zhuang, W., Cui, R. Z., Silva, D.-A., & Huang, X. (2011) · The Journal of Physical Chemistry B

Protein Structure and DynamicsSpectroscopy and Quantum Chemical Studies

Cited by 70

Hierarchical Nyström methods for constructing Markov state models for conformational dynamics

Yao, Y., Cui, R. Z., Bowman, G. R., Silva, D.-A., Sun, J., & Huang, X. (2013) · The Journal of Chemical Physics

Protein Structure and DynamicsAdvanced Physical and Chemical Molecular Interactions

Cited by 69

Synaptic Targeting and Function of SAPAPs Mediated by Phosphorylation-Dependent Binding to PSD-95 MAGUKs

Zhu, J., Zhou, Q., Shang, Y., Li, H., Peng, M., Ke, X., Weng, Z., Zhang, R., Huang, X., Li, S. S. C., et al. (2017) · Cell Reports

Neuroscience and Neuropharmacology ResearchGenetics and Neurodevelopmental Disorders

Cited by 68

Quantitative comparison of alternative methods for coarse-graining biological networks

Bowman, G. R., Meng, L., & Huang, X. (2013) · The Journal of Chemical Physics

Protein Structure and DynamicsAdvanced Physical and Chemical Molecular Interactions

Cited by 55

A Two-State Model for the Dynamics of the Pyrophosphate Ion Release in Bacterial RNA Polymerase

Da, L.-T., Pardo Avila, F., Wang, D., & Huang, X. (2013) · PLoS Computational Biology

Protein Structure and DynamicsRNA and protein synthesis mechanisms

Cited by 54

1′-Ribose cyano substitution allows Remdesivir to effectively inhibit nucleotide addition and proofreading during SARS-CoV-2 viral RNA replication

Zhang, L., Zhang, D., Wang, X., Yuan, C., Li, Y., Jia, X., Gao, X., Yen, H.-L., Cheung, P. P.-H., & Huang, X. (2021) · Physical Chemistry Chemical Physics

SARS-CoV-2 and COVID-19 ResearchComputational Drug Discovery Methods

Cited by 52

Role of 1’-Ribose Cyano Substitution for Remdesivir to Effectively Inhibit Nucleotide Addition and Proofreading in SARS-CoV-2 Viral RNA Replication

Zhang, L., Zhang, D., Wang, X., Yuan, C., Li, Y., Jia, X., Gao, X., Yen, H.-L., Cheung, P. P.-H., & Huang, X. (2020) · Physical Chemistry Chemical Physics

SARS-CoV-2 and COVID-19 ResearchComputational Drug Discovery Methods

Cited by 52

Microsecond timescale MD simulations at the transition state of Pm HMGR predict remote allosteric residues

Quinn, T. R., Steussy, C. N., Haines, B. E., Lei, J., Wang, W., Sheong, F. K., Stauffacher, C. V., Huang, X., Norrby, P.-O., Helquist, P., et al. (2021) · Chemical Science

Protein Structure and DynamicsPhysical Organic Chemistry and Reaction Kinetics

Cited by 12

Nucleosome condensate and linker DNA alter chromatin folding pathways and rates

Qiu, Y., Liu, S., Lin, X., Unarta, I. C., Huang, X., & Zhang, B. (2024) · Biophysical Journal

Genomics and Chromatin DynamicsProtein Structure and Dynamics

Cited by 10

Nucleosome condensate and linker DNA alter chromatin folding pathways and rates

Qiu, Y., Liu, S., Lin, X., Unarta, I. C., Huang, X., & Zhang, B. (2026) · Biophysical Journal

Genomics and Chromatin DynamicsProtein Structure and Dynamics

Cited by 10

Investigating the Structural Origin of Trpzip2 Temperature Dependent Unfolding Fluorescence Line Shape Based on a Markov State Model Simulation

Song, J., Gao, F., Cui, R. Z., Shuang, F., Liang, W., Huang, X., & Zhuang, W. (2012) · The Journal of Physical Chemistry B

Protein Structure and DynamicsSpectroscopy and Quantum Chemical Studies

Cited by 10

ScienceAgentBench: Toward Rigorous Assessment of Language Agents for Data-Driven Scientific Discovery

Chen, Z., Chen, S., Ning, Y., Zhang, Q., Wang, B., Yu, B., Li, Y., Liao, Z., Wei, C., Lu, Z., et al. (2024) · arXiv

Scientific Computing and Data ManagementArtificial Intelligence Applications

Cited by 7