Nielsen, Jens

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection

Lu, H., Li, F., Yuan, L., Domenzain, I., Yu, R., Wang, H., Li, G., Chen, Y., Ji, B., Kerkhoven, E. J., et al. (2021) · Molecular Systems Biology

Microbial Metabolic Engineering and BioproductionFungal and yeast genetics research

Cited by 44

Bridging the gaps in systems biology

Cvijovic, M., Almquist, J., Hagmar, J., Hohmann, S., Kaltenbach, H.-M., Klipp, E., Krantz, M., Mendes, P., Nelander, S., Nielsen, J., et al. (2014) · Molecular Genetics and Genomics

Gene Regulatory Network AnalysisBioinformatics and Genomic Networks

Cited by 40

Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast

Yu, R., Vorontsov, E., Sihlbom, C., & Nielsen, J. (2021) · eLife

Fungal and yeast genetics researchGene Regulatory Network Analysis

Cited by 35

Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast

Yu, R., Vorontsov, E., Sihlbom, C., & Nielsen, J. (2020) · eLife

Fungal and yeast genetics researchGene Regulatory Network Analysis

Cited by 35

Reconstruction of a Global Transcriptional Regulatory Network for Control of Lipid Metabolism in Yeast by Using Chromatin Immunoprecipitation with Lambda Exonuclease Digestion

Bergenholm, D., Liu, G., Holland, P., & Nielsen, J. (2018) · mSystems

Fungal and yeast genetics researchGenomics and Chromatin Dynamics

Cited by 31

The Role of Metabolism in Shaping Enzyme Structures Over 400 Million Years of Evolution

Lemke, O., Heineike, B. M., Viknander, S., Cohen, N., Steenwyk, J. L., Spranger, L., Li, F., Agostini, F., Lee, C. T., Aulakh, S. K., et al. (2024) · Nature

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 28

Dynamic13C-labeling experiments prove important differences in protein turnover rate between two Saccharomyces cerevisiae strains

Hong, K.-K., Hou, J., Shoaie, S., Nielsen, J., & Bordel, S. (2012) · FEMS Yeast Research

Fungal and yeast genetics researchMicrobial Metabolic Engineering and Bioproduction

Cited by 20

The molecular landscape of cellular metal ion biology

Aulakh, S. K., Lemke, O., Szyrwiel, L., Kamrad, S., Chen, Y., Hartl, J., Mülleder, M., Nielsen, J., & Ralser, M. (2025) · Cell Systems

Fungal and yeast genetics researchTrace Elements in Health

Cited by 19

Benchmarking accuracy and precision of intensity‐based absolute quantification of protein abundances in Saccharomyces cerevisiae

Sánchez, B. J., Lahtvee, P., Campbell, K., Kasvandik, S., Yu, R., Domenzain, I., Zelezniak, A., & Nielsen, J. (2021) · PROTEOMICS

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 18