Doyle, John C.

Fire in the Earth System

Bowman, D. M. J. S., Balch, J. K., Artaxo, P., Bond, W. J., Carlson, J. M., Cochrane, M. A., D’Antonio, C. M., DeFries, R. S., Doyle, J. C., Harrison, S. P., et al. (2009) · Science

Fire effects on ecosystemsPlant Water Relations and Carbon Dynamics

Cited by 3,351

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., Arkin, A. P., Bornstein, B. J., Bray, D., Cornish-Bowden, A., et al. (2003) · Bioinformatics

Gene Regulatory Network AnalysisBioinformatics and Genomic Networks

Cited by 3,060

Reverse engineering of biological complexity

Csete, M. E., & Doyle, J. C. (2002) · Science

Gene Regulatory Network AnalysisComplex Systems and Dynamics

Cited by 1,215

Robustness of cellular functions

Stelling, J., Sauer, U., Szallasi, Z., Doyle, F. J., & Doyle, J. (2004) · Cell

Gene Regulatory Network AnalysisEvolution and Genetic Dynamics

Cited by 1,049

Bow ties, metabolism and disease

Csete, M., & Doyle, J. (2004) · Trends in biotechnology

Gene Regulatory Network AnalysisBioinformatics and Genomic Networks

Cited by 468

Wildfires, complexity, and highly optimized tolerance

Moritz, M. A., Morais, M. E., Summerell, L. A., Carlson, J. M., & Doyle, J. (2005) · Proceedings of the National Academy of Sciences

Fire effects on ecosystemsEcosystem dynamics and resilience

Cited by 276

A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale

Bohland, J. W., Wu, C., Barbas, H., Bokil, H., Bota, M., Breiter, H. C., Cline, H. T., Doyle, J. C., Freed, P. J., Greenspan, R. J., et al. (2009) · PLoS Computational Biology

Functional Brain Connectivity StudiesAdvanced Neuroimaging Techniques and Applications

Cited by 261

Evolutionary tradeoffs in cellular composition across diverse bacteria

Kempes, C. P., Wang, L., Amend, J. P., Doyle, J., & Hoehler, T. (2016) · The ISME Journal

Bacterial Genetics and BiotechnologyRNA and protein synthesis mechanisms

Cited by 87

Diversity-enabled sweet spots in layered architectures and speed-accuracy trade-offs in sensorimotor control

Nakahira, Y., Liu, Q., Sejnowski, T. J., & Doyle, J. C. (2021) · Proceedings of the National Academy of Sciences

Motor Control and AdaptationNeural dynamics and brain function

Cited by 49

A quantitative framework for layered multirate control: Toward a theory of control architecture

Matni, N., Ames, A. D., & Doyle, J. C. (2024) · IEEE Control Systems

Advanced Control Systems OptimizationSystems Engineering Methodologies and Applications

Cited by 39