Ray, David A.

Whole-genome analyses resolve early branches in the tree of life of modern birds

Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., et al. (2014) · Science

Genomics and Phylogenetic StudiesEvolution and Paleontology Studies

Cited by 1,901

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

Broad Institute Genome Sequencing Platform, Mikkelsen, T. S., Broad Institute Whole Genome Assembly Team, Wakefield, M. J., Aken, B., Amemiya, C. T., Chang, J. L., Duke, S., Garber, M., Gentles, A. J., et al. (2007) · Nature

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 711

Six reference-quality genomes reveal evolution of bat adaptations

Jebb, D., Huang, Z., Pippel, M., Hughes, G. M., Lavrichenko, K., Devanna, P., Winkler, S., Jermiin, L. S., Skirmuntt, E. C., Katzourakis, A., et al. (2020) · Nature

Bat Biology and Ecology StudiesGenomics and Phylogenetic Studies

Cited by 361

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., Vandewege, M. W., St. John, J. A., Capella-Gutiérrez, S., Castoe, T. A., et al. (2014) · Science

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 359

Evolution and Diversity of Transposable Elements in Vertebrate Genomes

Sotero-Caio, C. G., Platt, R. N., Suh, A., & Ray, D. A. (2017) · Genome Biology and Evolution

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 283

Integrating gene annotation with orthology inference at scale

Kirilenko, B. M., Munegowda, C., Osipova, E., Jebb, D., Sharma, V., Blumer, M., Morales, A. E., Ahmed, A.-W., Kontopoulos, D.-G., Hilgers, L., et al. (2023) · Science

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 209

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

Ray, D. A., Feschotte, C., Pagan, H. J. T., Smith, J. D., Pritham, E. J., Arensburger, P., Atkinson, P. W., & Craig, N. L. (2008) · Genome Research

Chromosomal and Genetic VariationsBat Biology and Ecology Studies

Cited by 165

Three-dimensional genome rewiring in loci with human accelerated regions

Keough, K. C., Whalen, S., Inoue, F., Przytycki, P. F., Fair, T., Deng, C., Steyert, M., Ryu, H., Lindblad-Toh, K., Karlsson, E., et al. (2023) · Science

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 113

Low levels of nucleotide diversity in Crocodylus moreletii and evidence of hybridization with C. acutus

Ray, D. A., Dever, J. A., Platt, S. G., Rainwater, T. R., Finger, A. G., McMurry, S. T., Batzer, M. A., Barr, B., Stafford, P. J., McKnight, J., et al. (2004) · Conservation Genetics

Genetic diversity and population structureForensic and Genetic Research

Cited by 68

SINEs, evolution and genome structure in the opossum

Gu, W., Ray, D. A., Walker, J. A., Barnes, E. W., Gentles, A. J., Samollow, P. B., Jurka, J., Batzer, M. A., & Pollock, D. D. (2007) · Gene

Chromosomal and Genetic VariationsGenetic diversity and population structure

Cited by 18