Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.22.4673 · Cited by 64,617 · see citing works

MUSCLE: multiple sequence alignment with high accuracy and high throughput

Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662 · see citing works

Initial sequencing and analysis of the human genome

International Human Genome Sequencing Consortium, Whitehead Institute for Biomedical Research, C. F. G. R., Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., et al. (2001) · Nature · doi:10.1038/35057062 · Cited by 24,216 · see citing works

MODELTEST: testing the model of DNA substitution.

Posada, D., & Crandall, K. A. (1998) · Bioinformatics · doi:10.1093/bioinformatics/14.9.817 · Cited by 19,820 · see citing works

PAUP^* : Phylogenetic Analysis Using Parsimony (and other methods) 4.0b8

Swofford, D. L. (2001) · Cited by 12,789 · see citing works

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

Kumar, S. (2004) · Briefings in Bioinformatics · doi:10.1093/bib/5.2.150 · Cited by 11,642 · see citing works

Initial sequencing and comparative analysis of the mouse genome

Mouse Genome Sequencing Consortium (2002) · Nature · doi:10.1038/nature01262 · Cited by 7,187 · see citing works

PAUP * [Phylogenetic Analysis Using Parsimony (and Other Methods)]

Cummings, M. P. (2004) · Dictionary of Bioinformatics and Computational Biology · doi:10.1002/0471650129.dob0522 · Cited by 5,229 · see citing works

A unified classification system for eukaryotic transposable elements

Wicker, T., Sabot, F., Hua‐Van, A., Bennetzen, J. L., Capy, P., Chalhoub, B., Flavell, A. J., Leroy, P., Morgante, M., Panaud, O., et al. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2165 · Cited by 3,021 · see citing works

Genome sequence, comparative analysis and haplotype structure of the domestic dog

members, B. S. P., Lindblad-Toh, K., Wade, C. M., Mikkelsen, T. S., Karlsson, E. K., Jaffe, D. B., Kamal, M., Clamp, M., Chang, J. L., Kulbokas, E. J., et al. (2005) · Nature · doi:10.1038/nature04338 · Cited by 2,568 · see citing works

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

Gibbs, R. A., Weinstock, G. M., Metzker, M. L., Muzny, D. M., Sodergren, E. J., Scherer, S. E., Scott, G., Steffen, D. L., Worley, K. C., Burch, P. E., et al. (2004) · Nature · doi:10.1038/nature02426 · Cited by 2,147 · see citing works

DNA Methylation and Gene Function

Razin, A., & Riggs, A. D. (1980) · Science · doi:10.1126/science.6254144 · Cited by 2,076 · see citing works

Whole-Genome Shotgun Assembly and Analysis of the Genome of <i>Fugu rubripes</i>

Aparicio, S., Chapman, J., Stupka, E., Putnam, N., Chia, J.-M., Dehal, P., Christoffels, A., Rash, S., Hoon, S., Smit, A., et al. (2002) · Science · doi:10.1126/science.1072104 · Cited by 1,591 · see citing works

Bats: Important Reservoir Hosts of Emerging Viruses

Calisher, C. H., Childs, J. E., Field, H. E., Holmes, K. V., & Schountz, T. (2006) · Clinical Microbiology Reviews · doi:10.1128/cmr.00017-06 · Cited by 1,520 · see citing works

DNA transposons and the evolution of eukaryotic genomes.

Feschotte, C., & Pritham, E. J. (2007) · Annual Review of Genetics · doi:10.1146/annurev.genet.40.110405.090448 · Cited by 1,218 · see citing works

Molecular basis of base substitution hotspots in Escherichia coli

Coulondre, C., Miller, J. H., Farabaugh, P. J., & Gilbert, W. (1978) · Nature · doi:10.1038/274775a0 · Cited by 1,193 · see citing works

Transposable element contributions to plant gene and genome evolution

Bennetzen, J. L. (2000) · Plant Molecular Biology · doi:10.1023/a:1006344508454 · Cited by 771 · see citing works

Molecular Phylogeny and Divergence Times of Deuterostome Animals

Blair, J. E., & Hedges, S. B. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msi225 · Cited by 448 · see citing works

Evidence that a Recent Increase in Maize Genome Size was Caused by the Massive Amplification of Intergene Retrotransposons

SanMiguel, P. J. (1998) · Annals of Botany · doi:10.1006/anbo.1998.0746 · Cited by 439 · see citing works

Tiggers and DNA transposon fossils in the human genome.

Smit, A. F. A., & Riggs, A. D. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.4.1443 · Cited by 431 · see citing works

The evolutionary history of human DNA transposons: Evidence for intense activity in the primate lineagePreprint

Pace, J. K., & Feschotte, C. (2007) · Genome Research · doi:10.1101/gr.5826307 · Cited by 321 · see citing works

Acquisition of Host Cell DNA Sequences by Baculoviruses: Relationship Between Host DNA Insertions and FP Mutants of Autographa californica and Galleria mellonella Nuclear Polyhedrosis Viruses

Fraser, M. J., Smith, G., & Summers, M. D. (1983) · Journal of Virology · doi:10.1128/jvi.47.2.287-300.1983 · Cited by 297 · see citing works

Common Physical Properties of DNA Affecting Target Site Selection of Sleeping Beauty and other Tc1/mariner Transposable Elements

Vigdal, T. J., Kaufman, C. D., Izsvák, Z., Voytas, D. F., & Ivics, Z. (2002) · Journal of Molecular Biology · doi:10.1016/s0022-2836(02)00991-9 · Cited by 259 · see citing works

A Nuclear DNA Phylogenetic Perspective on the Evolution of Echolocation and Historical Biogeography of Extant Bats (Chiroptera)

Eick, G. N., Jacobs, D. S., & Matthee, C. A. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msi180 · Cited by 247 · see citing works

Does SINE evolution preclude Alu function?

Schmid, C. W. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.20.4541 · Cited by 230 · see citing works

MODERN THOUGHTS ON AN ANCYENT MARINERE: Function, Evolution, Regulation

Hartl, D. L., Lohe, A. R., & Lozovskaya, E. R. (1997) · Annual Review of Genetics · doi:10.1146/annurev.genet.31.1.337 · Cited by 226 · see citing works

Molecular phylogeny of New World Myotis (Chiroptera, Vespertilionidae) inferred from mitochondrial and nuclear DNA genes

Stadelmann, B., Lin, L. ‐., Kunz, T., & Rüedi, M. (2006) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2006.06.019 · Cited by 223 · see citing works

A Family Matter: Conclusive Resolution of the Taxonomic Position of the Long-Fingered Bats, Miniopterus

Miller‐Butterworth, C. M., Murphy, W. J., O’Brien, S. J., Jacobs, D. S., Springer, M. S., & Teeling, E. C. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm076 · Cited by 199 · see citing works

A virus mutant with an insertion of a copia-like transposable element

Miller, D. W., & Miller, L. K. (1982) · Nature · doi:10.1038/299562a0 · Cited by 197 · see citing works

Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences

Sarkar, A., Sim, C., Hong, Y. S., Hogan, J. R., Fraser, M. J., Robertson, H. M., & Collins, F. H. (2003) · Molecular Genetics and Genomics · doi:10.1007/s00438-003-0909-0 · Cited by 188 · see citing works

Cut and paste

Atzeni, P., & Mecca, G. (1997) · doi:10.1145/263661.263678 · Cited by 182 · see citing works

Miniature Inverted‐Repeat Transposable Elements and Their Relationship to Established DNA Transposons

Feschotte, C., Zhang, X., & Wessler, S. R. (2007) · Wiley eBooks · doi:10.1128/9781555817954.ch50 · Cited by 173 · see citing works

Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus

Pritham, E. J., & Feschotte, C. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0609601104 · Cited by 169 · see citing works

Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals

Piskurek, O., & Okada, N. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0700531104 · Cited by 149 · see citing works

Evolution of DNA Transposons in Eukaryotes

Robertson, H. M. (2007) · Wiley eBooks · doi:10.1128/9781555817954.ch48 · Cited by 106 · see citing works

Horizontal Escape of the Novel Tc1-Like Lepidopteran Transposon TCp3.2 into Cydia pomonella Granulovirus

Jehle, J. A., Nickel, A., Vlak, J. M., et al. (1998) · Journal of Molecular Evolution · doi:10.1007/pl00006296 · Cited by 98 · see citing works

Alu Element Mutation Spectra: Molecular Clocks and the Effect of DNA Methylation

Xing, J., Hedges, D. J., Han, K., et al. (2004) · Journal of Molecular Biology · doi:10.1016/j.jmb.2004.09.058 · Cited by 95 · see citing works

Bats with hATs: Evidence for Recent DNA Transposon Activity in Genus Myotis

Ray, D. A., Pagán, H. J. T., Thompson, M. L., & Stevens, R. D. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl192 · Cited by 87 · see citing works

Early Metazoan Divergence Was About 830 Million Years Ago

Gu, X. (1998) · Journal of Molecular Evolution · doi:10.1007/pl00013150 · Cited by 82 · see citing works

Unexpected Diversity and Differential Success of DNA Transposons in Four Species of Entamoeba Protozoans

Pritham, E. J., Feschotte, C., & Wessler, S. R. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msi169 · Cited by 66 · see citing works

Wide distribution of short interspersed elements among eukaryotic genomes

Borodulina, O. R., & Kramerov, D. (1999) · FEBS Letters · doi:10.1016/s0014-5793(99)01059-5 · Cited by 63 · see citing works

A family of Tc1-like transposons from the genomes of fishes and frogs: evidence for horizontal transmission

Leaver, M. J. (2001) · Gene · doi:10.1016/s0378-1119(01)00530-3 · Cited by 56 · see citing works

Members of the pogo superfamily of DNA-mediated transposons in the human genome

Robertson, H. M. (1996) · Molecular and General Genetics MGG · doi:10.1007/bf02173985 · Cited by 49 · see citing works

Vertebrate DNA Transposon as a Natural Mutator: The Medaka Fish Tol2 Element Contributes to Genetic Variation without Recognizable Traces

Koga, A. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl003 · Cited by 48 · see citing works

An Active Transposable Element, Herves, From the African Malaria Mosquito Anopheles gambiaeSequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession no. AY462096.

Arensburger, P., Kim, Y.-J., Orsetti, J., Aluvihare, C., O’Brochta, D. A., & Atkinson, P. W. (2004) · Genetics · doi:10.1534/genetics.104.036145 · Cited by 46 · see citing works

The genomes of most animals have multiple members of the Tc1 family of transposable elements

Avancini, R. M. P., Walden, K. K. O., & Robertson, H. M. (1996) · Genetica · doi:10.1007/bf00121361 · Cited by 45 · see citing works

PCR-based approach to SINE isolation: simple and complex SINEs.

Borodulina, O., & Kramerov, D. A. (2005) · Gene · doi:10.1016/j.gene.2004.12.035 · Cited by 42 · see citing works

Characterization of multiple lineages of Tc1-like elements within the genome of the amphibian Xenopus tropicalis

Sinzelle, L., Pollet, N., Bigot, Y., et al. (2005) · Gene · doi:10.1016/j.gene.2004.12.023 · Cited by 37 · see citing works

The Tc2 Transposon of Caenorhabditis elegans Has the Structure of a Self-Regulated Element

Ruvolo, V. R., HILL, J. E., & Levitt, A. M. (1992) · DNA and Cell Biology · doi:10.1089/dna.1992.11.111 · Cited by 24 · see citing works

The mariner Transposons Belonging to the irritans Subfamily Were Maintained in Chordate Genomes by Vertical Transmission

Sinzelle, L., Chesneau, A., Bigot, Y., et al. (2006) · Journal of Molecular Evolution · doi:10.1007/s00239-005-0013-7 · Cited by 22 · see citing works

Features of the mammal mar1 transposons in the human, sheep, cow, and mouse genomes and implications for their evolution

Demattei, M.-V., Augé‐Gouillou, C., Pollet, N., et al. (2000) · Mammalian Genome · doi:10.1007/s003350010204 · Cited by 12 · see citing works

Roles for retrotransposon insertions in human disease

Hancks, D. C., & Kazazian, H. H. (2016) · Mobile DNA · doi:10.1186/s13100-016-0065-9 · Cited by 670 · see citing works

Dynamic interactions between transposable elements and their hosts

Levin, H. L., & Moran, J. V. (2011) · Nature Reviews Genetics · doi:10.1038/nrg3030 · Cited by 621 · see citing works

The role of retrotransposable elements in ageing and age-associated diseases

Gorbunova, V., Seluanov, A., Mita, P., McKerrow, W., Fenyö, D., Boeke, J. D., Linker, S. B., Gage, F. H., Kreiling, J. A., Petrashen, A. P., et al. (2021) · Nature · doi:10.1038/s41586-021-03542-y · Cited by 457 · see citing works

Non-random distribution of transposable elements in the nuclear genome of plants

Capel, J., Montero, L. M., Martínez-Zapater, J. M., et al. (1993) · Nucleic Acids Research · doi:10.1093/nar/21.10.2369 · Cited by 27 · see citing works

Transposable elements and plant genome evolution

Sergeeva, E. M., & Salina, E. A. (2011) · Russian Journal of Genetics Applied Research · doi:10.1134/s2079059711060086 · Cited by 9 · see citing works

Active Transposition in Genomes

Huang, C. R. L., Burns, K. H., & Boeke, J. D. (2012) · Annual Review of Genetics · doi:10.1146/annurev-genet-110711-155616 · Cited by 412 · see citing works

The Functional Impact of Transposable Elements on the Diversity of Plant Genomes

Grzebelus, D. (2018) · Diversity · doi:10.3390/d10020018 · Cited by 26 · see citing works

Transposons in chloroplast genomes are distributed inhomogeneously among gymnosperms and angiosperms

Mutovina, O., & Sadovsky, M. G. (2020) · Journal of Physics Conference Series · doi:10.1088/1742-6596/1679/3/032095