Mirarab, Siavash

A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., et al. (2017) · Nature

Microbial Community Ecology and PhysiologyGenomics and Phylogenetic Studies

Cited by 2,684

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

Zhang, C., Rabiee, M., Sayyari, E., & Mirarab, S. (2018) · BMC Bioinformatics

Genomics and Phylogenetic StudiesEvolution and Paleontology Studies

Cited by 2,471

Whole-genome analyses resolve early branches in the tree of life of modern birds

Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., et al. (2014) · Science

Genomics and Phylogenetic StudiesEvolution and Paleontology Studies

Cited by 1,901

Phylotranscriptomic analysis of the origin and early diversification of land plants

Wickett, N. J., Mirarab, S., Nguyen, N., Warnow, T., Carpenter, E., Matasci, N., Ayyampalayam, S., Barker, M. S., Burleigh, J. G., Gitzendanner, M. A., et al. (2014) · Proceedings of the National Academy of Sciences

Protist diversity and phylogenyPlant Diversity and Evolution

Cited by 1,252

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Asnicar, F., Thomas, A. M., Beghini, F., Mengoni, C., Manara, S., Manghi, P., Zhu, Q., Bolzan, M., Cumbo, F., May, U., et al. (2020) · Nature Communications

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 869

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

Janssen, S., McDonald, D., Gonzalez, A., Navas-Molina, J. A., Jiang, L., Xu, Z. Z., Winker, K., Kado, D. M., Orwoll, E., Manary, M., et al. (2018) · mSystems

Genomics and Phylogenetic StudiesGut microbiota and health

Cited by 536

Dense sampling of bird diversity increases power of comparative genomics

Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Reeve, A. H., Xie, D., Chen, G., Guo, C., Faircloth, B. C., et al. (2020) · Nature

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 459

Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

Chen, L., Qiu, Q., Jiang, Y., Wang, K., Lin, Z., Li, Z., Bibi, F., Yang, Y., Wang, J., Nie, W., et al. (2019) · Science

Genomics and Phylogenetic StudiesEvolution and Paleontology Studies

Cited by 441

Statistical binning enables an accurate coalescent-based estimation of the avian tree

Mirarab, S., Bayzid, M. S., Boussau, B., & Warnow, T. (2014) · Science

Genomics and Phylogenetic StudiesGenetic diversity and population structure

Cited by 257

SEPP: SATé-Enabled Phylogenetic Placement

MIRARAB, S., NGUYEN, N., & WARNOW, T. (2011) · Biocomputing 2012

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 251

Identifying the favored mutation in a positive selective sweep.

Akbari, A., Vitti, J. J., Iranmehr, A., Bakhtiari, M., Sabeti, P. C., Mirarab, S., & Bafna, V. (2018) · Nature Methods

Evolution and Genetic DynamicsGenetic diversity and population structure

Cited by 95

ASTRAL-MP: scaling ASTRAL to very large datasets using randomization and parallelization

Yin, J., Zhang, C., & Mirarab, S. (2019) · Bioinformatics

Genomics and Phylogenetic StudiesParallel Computing and Optimization Techniques

Cited by 80