Kim, Stephanie

Fast and accurate protein structure search with Foldseek

van Kempen, M., Kim, S. S., Tumescheit, C., Mirdita, M., Lee, J., Gilchrist, C. L. M., Söding, J., & Steinegger, M. (2022) · Nature Biotechnology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 2,598

Fast and accurate protein structure search with Foldseek

van Kempen, M., Kim, S. S., Tumescheit, C., Mirdita, M., Lee, J., Gilchrist, C. L. M., Söding, J., & Steinegger, M. (2024) · Nature Biotechnology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 2,596

AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms

Bordin, N., Sillitoe, I., Nallapareddy, V., Rauer, C., Lam, S. D., Waman, V. P., Sen, N., Heinzinger, M., Littmann, M., Kim, S., et al. (2022) · Communications Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 103

AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms

Bordin, N., Sillitoe, I., Nallapareddy, V., Rauer, C., Lam, S. D., Waman, V. P., Sen, N., Heinzinger, M., Littmann, M., Kim, S., et al. (2023) · Communications Biology

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 103

Novel machine learning approaches revolutionize protein knowledge

Bordin, N., Dallago, C., Heinzinger, M., Kim, S., Littmann, M., Rauer, C., Steinegger, M., Rost, B., & Orengo, C. (2023) · Trends in Biochemical Sciences

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 72

Discovery of highly active kynureninases for cancer immunotherapy through protein language model

Eom, H., Park, S., Cho, K. S., Lee, J., Kim, H., Kim, S., Yang, J., Han, Y.-H., Lee, J., Seok, C., et al. (2025) · Nucleic Acids Research

Enzyme Catalysis and ImmobilizationMachine Learning in Bioinformatics

Cited by 10

Discovery of Highly Active Kynureninases for Cancer Immunotherapy through Protein Language Model

Eom, H., Cho, K. S., Lee, J., Kim, S., Park, S., Kim, H., Yang, J., Han, Y.-H., Lee, J., Seok, C., et al. (2024) · Nucleic Acids Research

Enzyme Catalysis and ImmobilizationMachine Learning in Bioinformatics

Cited by 10