Imakaev, Maxim

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

Lieberman-Aiden, E., van Berkum, N. L., Williams, L., Imakaev, M., Ragoczy, T., Telling, A., Amit, I., Lajoie, B. R., Sabo, P. J., Dorschner, M. O., et al. (2009) · Science

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 8,898

Formation of chromosomal domains by loop extrusion

Fudenberg, G., Imakaev, M., Lu, C., Goloborodko, A., Abdennur, N., & Mirny, L. A. (2016) · Cell Reports

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 2,003

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

Imakaev, M., Fudenberg, G., McCord, R. P., Naumova, N., Goloborodko, A., Lajoie, B. R., Dekker, J., & Mirny, L. A. (2012) · Nature Methods

Genomics and Chromatin DynamicsGenomic variations and chromosomal abnormalities

Cited by 1,423

Organization of the mitotic chromosome

Naumova, N., Imakaev, M., Fudenberg, G., Zhan, Y., Lajoie, B. R., Mirny, L. A., & Dekker, J. (2013) · Science

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 976

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition

Flyamer, I. M., Gassler, J., Imakaev, M., Brandão, H. B., Ulianov, S. V., Abdennur, N., Razin, S. V., Mirny, L. A., & Tachibana-Konwalski, K. (2017) · Nature

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 753

Heterochromatin drives compartmentalization of inverted and conventional nuclei

Falk, M., Feodorova, Y., Naumova, N., Imakaev, M., Lajoie, B. R., Leonhardt, H., Joffe, B., Dekker, J., Fudenberg, G., Solovei, I., et al. (2019) · Nature

Genomics and Chromatin DynamicsNuclear Structure and Function

Cited by 646

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains

Ulianov, S. V., Khrameeva, E. E., Gavrilov, A. A., Flyamer, I. M., Kos, P., Mikhaleva, E. A., Penin, A. A., Logacheva, M. D., Imakaev, M. V., Chertovich, A., et al. (2016) · Genome Research

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 388

Cooltools: Enabling high-resolution Hi-C analysis in Python

Open2C, Abdennur, N., Abraham, S., Fudenberg, G., Flyamer, I. M., Galitsyna, A. A., Goloborodko, A., Imakaev, M., Oksuz, B. A., Venev, S. V., et al. (2024) · PLOS Computational Biology

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 313

FISH-ing for captured contacts: towards reconciling FISH and 3C

Fudenberg, G., & Imakaev, M. (2017) · Nature Methods

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 141

Chromatin loops as allosteric modulators of enhancer-promoter interactions

Doyle, B., Fudenberg, G., Imakaev, M., & Mirny, L. A. (2014) · PLoS Computational Biology

Genomics and Chromatin DynamicsDiffusion and Search Dynamics

Cited by 114

Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure

Ulianov, S. V., Galitsyna, A. A., Flyamer, I. M., Golov, A. K., Khrameeva, E. E., Imakaev, M. V., Abdennur, N. A., Gelfand, M. S., Gavrilov, A. A., & Razin, S. V. (2017) · Epigenetics & Chromatin

Genomics and Chromatin DynamicsHemoglobinopathies and Related Disorders

Cited by 19