Zhang, Bin

Genome-wide atlas of gene expression in the adult mouse brain

Lein, E. S., Hawrylycz, M. J., Ao, N., Ayres, M., Bensinger, A., Bernard, A., Boe, A. F., Boguski, M. S., Brockway, K. S., Byrnes, E. J., et al. (2007) · Nature

Single-cell and spatial transcriptomicsGene expression and cancer classification

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A pan-cancer single-cell transcriptional atlas of tumor infiltrating myeloid cells

Cheng, S., Li, Z., Gao, R., Xing, B., Gao, Y., Yang, Y., Qin, S., Zhang, L., Ouyang, H., Du, P., et al. (2021) · Cell

Immune cells in cancerSingle-cell and spatial transcriptomics

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Genetics of gene expression and its effect on disease

Emilsson, V., Thorleifsson, G., Zhang, B., Leonardson, A. S., Zink, F., Zhu, J., Carlson, S., Helgason, A., Walters, G. B., Gunnarsdottir, S., et al. (2008) · Nature

Genetic Associations and EpidemiologyAdipokines, Inflammation, and Metabolic Diseases

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African lungfish genome sheds light on the vertebrate water-to-land transition

Wang, K., Wang, J., Zhu, C., Yang, L., Ren, Y., Ruan, J., Fan, G., Hu, J., Xu, W., Bi, X., et al. (2021) · Cell

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

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GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

Zvyagin, M., Brace, A., Hippe, K., Deng, Y., Zhang, B., Bohorquez, C. O., Clyde, A., Kale, B., Perez-Rivera, D., Ma, H., et al. (2022) · The International Journal of High Performance Computing Applications

SARS-CoV-2 and COVID-19 ResearchGenomics and Phylogenetic Studies

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GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

Zvyagin, M., Brace, A., Hippe, K., Deng, Y., Zhang, B., Bohorquez, C. O., Clyde, A., Kale, B., Perez-Rivera, D., Ma, H., et al. (2023) · The International Journal of High Performance Computing Applications

SARS-CoV-2 and COVID-19 ResearchGenomics and Phylogenetic Studies

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PPML-Omics: A privacy-preserving federated machine learning method protects patients’ privacy in omic data

Zhou, J., Chen, S., Wu, Y., Li, H., Zhang, B., Zhou, L., Hu, Y., Xiang, Z., Li, Z., Chen, N., et al. (2024) · Science Advances

Privacy-Preserving Technologies in DataCryptography and Data Security

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DeeReCT-APA: Prediction of Alternative Polyadenylation Site Usage Through Deep Learning

Li, Z., Li, Y., Zhang, B., Li, Y., Long, Y., Zhou, J., Zou, X., Zhang, M., Hu, Y., Chen, W., et al. (2022) · Genomics, Proteomics & Bioinformatics

RNA Research and SplicingGenomics and Phylogenetic Studies

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TPTU: Large Language Model-based AI Agents for Task Planning and Tool Usage

Ruan, J., Chen, Y., Zhang, B., Xu, Z., Bao, T., Du, G., Shi, S., Mao, H., Li, Z., Zeng, X., et al. (2023) · arXiv

AI-based Problem Solving and PlanningTopic Modeling

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