Liu, Qi
Tongji University
7 papers on CoChatORCID 0000-0003-2578-1221
Most cited papers
- Verified
DeepCRISPR: Optimized CRISPR guide RNA design by deep learning
Chuai, G., Ma, H., Yan, J., Chen, M., Hong, N., Xue, D., Zhou, C., Zhu, C., Chen, K., Duan, B., et al. (2018) · Genome biology
CRISPR and Genetic EngineeringRNA regulation and disease
Cited by 641
- Verified
Pan-Peptide Meta Learning for T-cell receptor–antigen binding recognition
Gao, Y., Gao, Y., Fan, Y., Zhu, C., Wei, Z., Zhou, C., Chuai, G., Chen, Q., Zhang, H., & Liu, Q. (2023) · Nature Machine Intelligence
vaccines and immunoinformatics approachesT-cell and B-cell Immunology
Cited by 155
- Verified
Model-based understanding of single-cell CRISPR screening
Duan, B., Zhou, C., Zhu, C., Yu, Y., Li, G., Zhang, S., Zhang, C., Ye, X., Ma, H., Qu, S., et al. (2019) · Nature Communications
Single-cell and spatial transcriptomicsCRISPR and Genetic Engineering
Cited by 98
- Verified
Benchmarking algorithms for generalizable single-cell perturbation response prediction
Wei, Z., Wang, Y., Gao, Y., Wang, S., Li, P., Si, D., Gao, Y., Wu, S., Li, D., Dong, K., et al. (2026) · Nature Methods
Single-cell and spatial transcriptomicsGene Regulatory Network Analysis
Cited by 42
- Verified
Discovering CRISPR-Cas system with self-processing pre-crRNA capability by foundation models
Li, W., Jiang, X., Wang, W., Hou, L., Cai, R., Li, Y., Gu, Q., Chen, Q., Ma, P., Tang, J., et al. (2024) · Nature Communications
CRISPR and Genetic EngineeringGenomics and Phylogenetic Studies
Cited by 21
- Verified
Novel CRISPR-Cas12a Clades Discovery Using Large Language Model
Huang, X., Feng, Y., Shi, J., Yang, J., Li, Z., Li, Y., Tang, J., Yang, Y., Zheng, J., Han, W., et al. (2024) · Nature Communications
CRISPR and Genetic EngineeringMachine Learning in Bioinformatics
Cited by 21
- Verified
Discovery of CRISPR-Cas12a clades using a large language model
Feng, Y., Shi, J., Li, Z., Li, Y., Yang, J., Huang, S., Zheng, J., Han, W., Qiao, Y., Zhang, J., et al. (2025) · Nature Communications
CRISPR and Genetic EngineeringMachine Learning in Bioinformatics
Cited by 21
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