Adams, David J.

Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and “resurrected” pseudogenes in the mouse genome

Brosch, M., Saunders, G. I., Frankish, A., Collins, M. O., Yu, L., Wright, J., Verstraten, R., Adams, D. J., Harrow, J., Choudhary, J. S., et al. (2011) · Genome Research

Advanced Proteomics Techniques and ApplicationsGenomics and Phylogenetic Studies

Cited by 130

Germline MC1R status influences somatic mutation burden in melanoma

Robles-Espinoza, C. D., Roberts, N. D., Chen, S., Leacy, F. P., Alexandrov, L. B., Pornputtapong, N., Halaban, R., Krauthammer, M., Cui, R., Timothy Bishop, D., et al. (2016) · Nature Communications

Cutaneous Melanoma Detection and ManagementMelanoma and MAPK Pathways

Cited by 124

Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations

Doran, A. G., Wong, K., Flint, J., Adams, D. J., Hunter, K. W., & Keane, T. M. (2016) · Genome Biology

Genomics and Phylogenetic StudiesGenetic and phenotypic traits in livestock

Cited by 101

Epitope spreading toward wild-type melanocyte-lineage antigens rescues suboptimal immune checkpoint blockade responses

Lo, J. A., Kawakubo, M., Juneja, V. R., Su, M. Y., Erlich, T. H., LaFleur, M. W., Kemeny, L. V., Rashid, M., Malehmir, M., Rabi, S. A., et al. (2021) · Science Translational Medicine

Cancer Immunotherapy and BiomarkersImmunotherapy and Immune Responses

Cited by 97

Current Trends in Laboratory Class Teaching in University Bioscience Programmes

Adams, D. J. (2009) · Bioscience Education

Innovative Teaching MethodsScience Education and Pedagogy

Cited by 79

Tumour gene expression signature in primary melanoma predicts long-term outcomes

Garg, M., Couturier, D.-L., Nsengimana, J., Fonseca, N. A., Wongchenko, M., Yan, Y., Lauss, M., Jönsson, G. B., Newton-Bishop, J., Parkinson, C., et al. (2021) · Nature Communications

Cutaneous Melanoma Detection and ManagementBreast Cancer Treatment Studies

Cited by 70

High-resolution functional mapping of RAD51C by saturation genome editing

Olvera-León, R., Zhang, F., Offord, V., Zhao, Y., Tan, H. K., Gupta, P., Pal, T., Robles-Espinoza, C. D., Arriaga-González, F. G., Matsuyama, L. S. A. S., et al. (2024) · Cell

BRCA gene mutations in cancerGenomics and Rare Diseases

Cited by 44

Genome-wide genetic screening with chemically mutagenized haploid embryonic stem cells

Forment, J. V., Herzog, M., Coates, J., Konopka, T., Gapp, B. V., Nijman, S. M., Adams, D. J., Keane, T. M., & Jackson, S. P. (2017) · Nature Chemical Biology

CRISPR and Genetic EngineeringPlant Genetic and Mutation Studies

Cited by 40

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

Viner, C., Ishak, C. A., Johnson, J., Walker, N. J., Shi, H., Sjöberg-Herrera, M. K., Shen, S. Y., Lardo, S. M., Adams, D. J., Ferguson-Smith, A. C., et al. (2024) · Genome Biology

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 30

Mouse protein coding diversity: What’s left to discover?

Lilue, J., Shivalikanjli, A., Adams, D. J., & Keane, T. M. (2019) · PLOS Genetics

Genomics and Phylogenetic StudiesGenetic Mapping and Diversity in Plants and Animals

Cited by 19

Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet

Viner, C., Ishak, C. A., Johnson, J., Walker, N. J., Shi, H., Sjöberg-Herrera, M. K., Shen, S. Y., Lardo, S. M., Adams, D. J., Ferguson-Smith, A. C., et al. (2016) · bioRxiv (Cold Spring Harbor Laboratory)

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 18

Workshop report: the clinical application of data from multiplex assays of variant effect (MAVEs), 12 July 2023

Allen, S., Garrett, A., Muffley, L., Fayer, S., Foreman, J., Adams, D. J., Hurles, M., Rubin, A. F., Roth, F. P., Starita, L. M., et al. (2024) · European Journal of Human Genetics

Genomics and Rare DiseasesGenetic Associations and Epidemiology

Cited by 17

The structural diversity of telomeres and centromeres across mouse subspecies revealed by complete assemblies

Francis, B., Gozashti, L., Costello, K., Kasahara, T., Harringmeyer, O. S., Lilue, J., Helmy, M., Kato, T., Czechanski, A., Quail, M., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory)

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 8

IFI207, a young and fast-evolving protein, controls retroviral replication via the STING pathway

Moran, E. A., Salas-Briceno, K., Zhao, W., Enya, T., Aguilera, A. N., Acosta, I., Alonzo, F., Kiani, D., Behnsen, J., Alvarez, C., et al. (2024) · mBio

interferon and immune responsesImmune Response and Inflammation

Cited by 4

Protocol for the functional evaluation of genetic variants using saturation genome editing

Obolenski, S., Olvera-León, R., Sun, D., Adams, D. J., & Waters, A. J. (2025) · STAR Protocols

CRISPR and Genetic EngineeringGenomics and Rare Diseases

Cited by 3

High-quality mouse reference genomes reveal the structural complexity of the murine protein-coding landscape

Helmy, M., Li, J. U., Yan, X. F., Meade, R. K., Anderson, E., Chen, P. B., Czechanski, A. M., Di Domenico, T., Flint, J., Garrison, E., et al. (2026) · Cell Genomics

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 2