Yang, Jianyi

The I-TASSER Suite: protein structure and function prediction

Yang, J., Yan, R., Roy, A., Xu, D., Poisson, J., & Zhang, Y. (2015) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 5,596

Improved protein structure prediction using predicted interresidue orientations

Yang, J., Anishchenko, I., Park, H., Peng, Z., Ovchinnikov, S., & Baker, D. (2020) · Proceedings of the National Academy of Sciences

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 1,421

Single-sequence protein structure prediction using supervised transformer protein language models

Wang, W., Peng, Z., & Yang, J. (2022) · Nature Computational Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 150

Single-sequence protein structure prediction using supervised transformer protein language models

Wang, W., Peng, Z., & Yang, J. (2022) · Nature Computational Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 150

PLMSearch: Protein language model powers accurate and fast sequence search for remote homology

Liu, W., Wang, Z., You, R., Xie, C., Wei, H., Xiong, Y., Yang, J., & Zhu, S. (2024) · Nature Communications

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 96

Democratizing protein language model training, sharing and collaboration

Su, J., Li, Z., Tao, T., Han, C., He, Y., Dai, F., Yuan, Q., Gao, Y., Si, T., Zhang, X., et al. (2026) · Nature Biotechnology

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 35

Generating dynamic structures through physics-based sampling of trRosettaX2-predicted inter-residue geometries

Xiang, C., Wang, W., Peng, Z., & Yang, J. (2025) · Advanced Science

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 6

Rapid and accurate protein structure database search using inverse folding model and contrastive learning

Lyu, Q., Wei, H., Chen, S., Peng, Z., & Yang, J. (2025) · Journal of Chemical Information and Modeling

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 1

Rapid and Accurate Protein Structure Database Search Using Inverse Folding Model and Contrastive Learning

Lyu, Q., Wei, H., Chen, S., Peng, Z., & Yang, J. (2025) · Journal of Chemical Information and Modeling

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 1