The DOI matches its Crossref record; 58 of the 59 references it cites were found in a registry or an index.
Natural Language Processing in Oncology: A Review
Abstract
IMPORTANCE: Natural language processing (NLP) has the potential to accelerate translation of cancer treatments from the laboratory to the clinic and will be a powerful tool in the era of personalized medicine. This technology can harvest important clinical variables trapped in the free-text narratives within electronic medical records. OBSERVATIONS: Natural language processing can be used as a tool for oncological evidence-based research and quality improvement. Oncologists interested in applying NLP for clinical research can play pivotal roles in building NLP systems and, in doing so, contribute to both oncological and clinical NLP research. Herein, we provide an introduction to NLP and its potential applications in oncology, a description of specific tools available, and a review on the state of the current technology with respect to cancer case identification, staging, and outcomes quantification. CONCLUSIONS AND RELEVANCE: More automated means of leveraging unstructured data from daily clinical practice is crucial as therapeutic options and access to individual-level health information increase. Research-minded oncologists may push the avenues of evidence-based research by taking advantage of the new technologies available with clinical NLP. As continued progress is made with applying NLP toward oncological research, incremental gains will lead to large impacts, building a cost-effective infrastructure for advancing cancer care.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Natural language processing (NLP) increases productivity in clinical oncology by converting unstructured text into analyzable data and standardizing documentation [41,42,43,44,45,46].”
From Artificial Intelligence in Clinical Oncology: From Productivity Enhancement to Creative Discovery (2025) · cites this paper as [43]
Citations
Cites
Baeza-Yates, R. A., & Ribeiro-Neto, B. A. (1999) · Cited by 11,505
The unified medical language system (UMLS): integrating biomedical terminology
Bodenreider, O. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh061 · Cited by 4,356
Savova, G. K., Masanz, J. J., Ogren, P. V., Zheng, J., Sohn, S., Kipper-Schuler, K. C., & Chute, C. G. (2010) · Journal of the American Medical Informatics Association · doi:10.1136/jamia.2009.001560 · Cited by 1,967
2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text
Uzuner, Ö., South, B. R., Shen, S., & DuVall, S. L. (2011) · Journal of the American Medical Informatics Association · doi:10.1136/amiajnl-2011-000203 · Cited by 1,292
Saeed, M., Villarroel, M., Reisner, A. T., Clifford, G., Lehman, L.-W., Moody, G., Heldt, T., Kyaw, T. H., Moody, B., & Mark, R. G. (2011) · Critical Care Medicine · doi:10.1097/ccm.0b013e31820a92c6 · Cited by 1,162
Agreement, the F-Measure, and Reliability in Information Retrieval
Hripcsak, G. M. (2005) · Journal of the American Medical Informatics Association · doi:10.1197/jamia.m1733 · Cited by 949
Savova, G. K., Kipper-Schuler, K. C., Hurdle, J. F., & Meystre, S. M. (2008) · Yearbook of Medical Informatics · doi:10.1055/s-0038-1638592 · Cited by 895
What can natural language processing do for clinical decision support?
Demner‐Fushman, D., Chapman, W. W., & McDonald, C. J. (2009) · Journal of Biomedical Informatics · doi:10.1016/j.jbi.2009.08.007 · Cited by 716
Hersh, W. R., Weiner, M. G., Embi, P. J., Logan, J. R., Payne, P. R. O., Bernstam, E. V., Lehmann, H. P., Hripcsak, G., Hartzog, T. H., Cimino, J. J., et al. (2013) · Medical Care · doi:10.1097/mlr.0b013e31829b1dbd · Cited by 567
A review of approaches to identifying patient phenotype cohorts using electronic health records
Shivade, C., Raghavan, P., Fosler‐Lussier, E., Embí, P. J., Elhadad, N., Johnson, S. B., & Lai, A. M. (2013) · Journal of the American Medical Informatics Association · doi:10.1136/amiajnl-2013-001935 · Cited by 549
Cited by
Sorted by citations
The art of crafting a systematic literature review in entrepreneurship research
Kraus, S., Breier, M., & Dasí-Rodríguez, S. (2020) · International Entrepreneurship and Management Journal · doi:10.1007/s11365-020-00635-4 · Cited by 1,319
Clinical information extraction applications: A literature review
Wang, Y., Wang, L., Rastegar-Mojarad, M., Moon, S., Shen, F., Afzal, N., Liu, S., Zeng, Y., Mehrabi, S., Sohn, S., et al. (2018) · Journal of Biomedical Informatics · doi:10.1016/j.jbi.2017.11.011 · Cited by 910
Koleck, T. A., Dreisbach, C., Bourne, P. E., & Henry, S. B. (2018) · Journal of the American Medical Informatics Association · doi:10.1093/jamia/ocy173 · Cited by 409
The Role of Artificial Intelligence in Early Cancer Diagnosis
Hunter, B., Hindocha, S., & Lee, R. W. (2022) · Cancers · doi:10.3390/cancers14061524 · Cited by 384
Kumar, S., Metz, D. C., Ellenberg, S. S., Kaplan, D. E., & Goldberg, D. S. (2019) · Gastroenterology · doi:10.1053/j.gastro.2019.10.019 · Cited by 291
Metadata
- Authors
- Yim, W.-W., Yetisgen, M., Harris, W. P., & Kwan, S. W.
- Affiliations
- University of Washington Medical Center (US)
- Departments of Biomedical and Health Informatics, University of Washington Medical Center, Seattle2Departments of Linguistics, University of Washington Medical Center, Seattle
- Venue
- JAMA Oncology
- Publisher
- American Medical Association (AMA)
- Published
- 2016-06-01
- Volume
- 2
- Issue
- 6
- Pages
- 797
- ISSN
- 2374-2437 (ISSN-L)
- OpenAlex
- W2345195116
- Cited by
- 298
- References
- 59
- Citations by year
- 2026: 23 · 2025: 40 · 2024: 38 · 2023: 44 · 2022: 35 · 2021: 40 · 2020: 33 · 2019: 23 · 2018: 11 · 2017: 10 · 2016: 1
- FWCI
- 7.79
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- JAMA Oncology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Health Sciences › Medicine › Health Informatics › Biomedical Text Mining and Ontologies
- Physical Sciences › Computer Science › Artificial Intelligence › Machine Learning in Healthcare
- Health Sciences › Health Professions › Health Information Management › Electronic Health Records Systems
- Keywords
- natural language processing, oncology, clinical natural language processing, clinical text, electronic health records, tumor staging, evidence-based oncology, quality improvement, personalized medicine, clinical research tools
- MeSH terms
- Humans, Natural Language Processing, Neoplasms, Biomedical Research, Translational Research, Biomedical, Electronic Health Records
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review