The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Visualizing Phylogenetic Trees Using TreeView
Abstract
TreeView provides a simple way to view the phylogenetic trees produced by a range of programs, such as PAUP*, PHYLIP, TREE‐PUZZLE, and ClustalX. While some phylogenetic programs (such as the Macintosh version of PAUP*) have excellent tree printing facilities, many programs do not have the ability to generate publication quality trees. TreeView addresses this need. The program can read and write a range of tree file formats, display trees in a variety of styles, print trees, and save the tree as a graphic file. Protocols in this unit cover both displaying and printing a tree. Support protocols describe how to download and install TreeView, and how to display bootstrap values in trees generated by ClustalX and PAUP*.
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Cites
Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies
Strimmer, K., & von Haeseler, A. (1996) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025664 · Cited by 2,531
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Yu, G. (2020) · Current Protocols in Bioinformatics · doi:10.1002/cpbi.96 · Cited by 1,377
The Newick utilities: high-throughput phylogenetic tree processing in the U nix shell
Junier, T., & Zdobnov, E. M. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq243 · Cited by 788
Argout, X., Salse, J., Aury, J.-M., Guiltinan, M. J., Droc, G., Gouzy, J., Allegre, M., Chaparro, C., Legavre, T., Maximova, S. N., et al. (2011) · Nature Genetics · doi:10.1038/ng.736 · Cited by 746
Impact of Tumor Microenvironment and Epithelial Phenotypes on Metabolism in Breast Cancer
Brauer, H. A., Makowski, L., Hoadley, K. A., Casbas-Hernandez, P., Lang, L. J., Romàn-Pèrez, E., D'Arcy, M., Freemerman, A. J., Perou, C. M., & Troester, M. A. (2013) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-12-2123 · Cited by 96
Evolution of an X-linked primate-specific micro RNA cluster
Li, J., Liu, Y., Dong, D., & Zhang, Z. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msp284 · Cited by 70
Metadata
- Authors
- Page, R. D. M.
- Venue
- Current Protocols in Bioinformatics
- Publisher
- Wiley
- Published
- 2002-08
- Volume
- 00
- Issue
- 1
- Pages
- Unit 6.2-Unit 6.2
- ISSN
- 1934-3396 (ISSN-L)
- 1934-340X
- OpenAlex
- W1494031014
- Cited by
- 199
- References
- 1
- FWCI
- 0.11
- Type
- journal article
- Language
- en
- Open access
- closed
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
