Constrained Peptides with Target‐Adapted Cross‐Links as Inhibitors of a Pathogenic Protein–Protein Interaction
Abstract
Bioactive conformations of peptides can be stabilized by macrocyclization, resulting in increased target affinity and activity. Such macrocyclic peptides proved useful as modulators of biological functions, in particular as inhibitors of protein–protein interactions (PPI). However, most peptide‐derived PPI inhibitors involve stabilized α‐helices, leaving a large number of secondary structures unaddressed. Herein, we present a rational approach towards stabilization of an irregular peptide structure, using hydrophobic cross‐links that replace residues crucially involved in target binding. The molecular basis of this interaction was elucidated by X‐ray crystallography and isothermal titration calorimetry. The resulting cross‐linked peptides inhibit the interaction between human adaptor protein 14‐3‐3 and virulence factor exoenzyme S. Taking into consideration that irregular peptide structures participate widely in PPIs, this approach provides access to novel peptide‐derived inhibitors.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Cites
Talbot, G. H., Bradley, J. S., Edwards, J. E., Gilbert, D. N., Scheld, M., & Bartlett, J. G. (2006) · Clinical Infectious Diseases · doi:10.1086/499819 · Cited by 1,106 · see citing works
Contemporary strategies for peptide macrocyclization
White, C. J., & Yudin, A. K. (2011) · Nature Chemistry · doi:10.1038/nchem.1062 · Cited by 1,088 · see citing works
Inhibition of α-helix-mediated protein–protein interactions using designed molecules
Azzarito, V., Long, K., Murphy, N. S., & Wilson, A. J. (2013) · Nature Chemistry · doi:10.1038/nchem.1568 · Cited by 727 · see citing works
Chang, Y. S., Graves, B. J., Guerlavais, V., Tovar, C., Packman, K. E., To, K.-H., Olson, K. A., Kesavan, K. P., Gangurde, P., Mukherjee, A., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1303002110 · Cited by 666 · see citing works
Binding Affinities of Host–Guest, Protein–Ligand, and Protein–Transition‐State Complexes
Houk, K. N., Leach, A. G., Kim, S. P., & Zhang, X. (2003) · Angewandte Chemie International Edition · doi:10.1002/anie.200200565 · Cited by 587 · see citing works
Peptidomimetic Antibiotics Target Outer-Membrane Biogenesis in Pseudomonas aeruginosa
Srinivas, N., Jetter, P., Ueberbacher, B. J., Werneburg, M., Zerbe, K., Steinmann, J., van der Meijden, B., Bernardini, F., Lederer, A., Dias, R. L. A., et al. (2010) · Science · doi:10.1126/science.1182749 · Cited by 550 · see citing works
Multivalent glycoconjugates as anti-pathogenic agents
Bernardi, A., Jiménez‐Barbero, J., Casnati, A., Castro, C. D., Darbre, T., Fieschi, F., Finne, J., Funken, H., Jaeger, K., Lahmann, M., et al. (2012) · Chemical Society Reviews · doi:10.1039/c2cs35408j · Cited by 539 · see citing works
The MCL-1 BH3 helix is an exclusive MCL-1 inhibitor and apoptosis sensitizer
Stewart, M. L., Fire, E., Keating, A. E., & Walensky, L. D. (2010) · Nature Chemical Biology · doi:10.1038/nchembio.391 · Cited by 418 · see citing works
Treatment and control of severe infections caused by multiresistant Pseudomonas aeruginosa
Rossolini, G. M., & Mantengoli, E. (2005) · Clinical Microbiology and Infection · doi:10.1111/j.1469-0691.2005.01161.x · Cited by 398 · see citing works
Synthesis of all-hydrocarbon stapled α-helical peptides by ring-closing olefin metathesis
Kim, Y.-W., Grossmann, T. N., & Verdine, G. L. (2011) · Nature Protocols · doi:10.1038/nprot.2011.324 · Cited by 376 · see citing works
Self-citationβ-Hairpin Peptidomimetics: Design, Structures and Biological Activities
Robinson, J. A. (2008) · Accounts of Chemical Research · doi:10.1021/ar700259k · Cited by 321 · see citing works
Inhibition of protein–protein interactions using designed molecules
Wilson, A. J. (2009) · Chemical Society Reviews · doi:10.1039/b807197g · Cited by 262 · see citing works
Structure of the Stapled p53 Peptide Bound to Mdm2
Baek, S., Kutchukian, P. S., Verdine, G. L., Huber, R., Holak, T. A., Lee, K. W., & Popowicz, G. M. (2012) · Journal of the American Chemical Society · doi:10.1021/ja2090367 · Cited by 259 · see citing works
Design and Structure of Stapled Peptides Binding to Estrogen Receptors
Phillips, C., Roberts, L. R., Schade, M., Bazin, R., Bent, A., Davies, N. L., Moore, R., Pannifer, A. D., Pickford, A. R., Prior, S. H., et al. (2011) · Journal of the American Chemical Society · doi:10.1021/ja202946k · Cited by 247 · see citing works
Thiel, P., Kaiser, M., & Ottmann, C. (2012) · Angewandte Chemie International Edition · doi:10.1002/anie.201107616 · Cited by 207 · see citing works
Self-citationManifestations of the tertiary structures of proteins in high-frequency nuclear magnetic resonance
McDonald, C. C., & Phillips, W. D. (1967) · Journal of the American Chemical Society · doi:10.1021/ja01000a061 · Cited by 200 · see citing works
Bicyclic Peptide Inhibitor Reveals Large Contact Interface with a Protease Target
Angelini, A., Cendron, L., Chen, S., Touati, J., Winter, G. P., Zanotti, G., & Heinis, C. (2012) · ACS Chemical Biology · doi:10.1021/cb200478t · Cited by 182 · see citing works
Guharoy, M., & Chakrabarti, P. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm274 · Cited by 177 · see citing works
Round and Round we Go: Cyclic Peptides in Disease
Matsoukas, J., Apostolopoulos, V., Lazoura, E., et al. (2006) · Current Medicinal Chemistry · doi:10.2174/092986706777935113 · Cited by 164 · see citing works
London, N., Raveh, B., Movshovitz‐Attias, D., & Schueler‐Furman, O. (2010) · Proteins: Structure, Function, and Bioinformatics · doi:10.1002/prot.22785 · Cited by 164 · see citing works
Ottmann, C., Yasmin, L., Weyand, M., Veesenmeyer, J. L., Diaz, M. H., Palmer, R. H., Francis, M. S., Hauser, A. R., Wittinghofer, A., & Hallberg, B. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601530 · Cited by 164 · see citing works
Self-citationMinimalist and universal peptidomimetics
Ko, E., Liu, J., & Burgess, K. (2011) · Chemical Society Reviews · doi:10.1039/c0cs00218f · Cited by 99 · see citing works
Page, R., Peti, W., Wilson, I. A., Stevens, R. C., & Kurt Wüthrich, A. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0408490102 · Cited by 87 · see citing works
Bindungsaffinitäten von Wirt‐Gast‐, Protein‐Ligand‐ und Protein‐Übergangszustands‐Komplexen
Houk, K. N., Leach, A. G., Kim, S. P., & Zhang, X. (2003) · Angewandte Chemie · doi:10.1002/ange.200200565 · Cited by 80 · see citing works
Solid-phase synthesis of short α-helices stabilized by the hydrogen bond surrogate approach
Patgiri, A., Menzenski, M. Z., Mahon, A. B., & Arora, P. S. (2010) · Nature Protocols · doi:10.1038/nprot.2010.146 · Cited by 68 · see citing works
Thiel, P., Kaiser, M., & Ottmann, C. (2012) · Angewandte Chemie · doi:10.1002/ange.201107616 · Cited by 23 · see citing works
Self-citationElectrostatic interactions play a minor role in the binding of ExoS to 14-3-3 proteins
Yasmin, L., Veesenmeyer, J. L., Diaz, M. H., et al. (2010) · Biochemical Journal · doi:10.1042/bj20100043 · Cited by 14 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Modulators of Protein–Protein Interactions
Milroy, L.-G., Grossmann, T. N., Hennig, S., Brunsveld, L., & Ottmann, C. (2014) · Chemical Reviews · doi:10.1021/cr400698c · Cited by 497 · see citing works
Self-citation
- Authors
- Glas, A., Bier, D., Hahne, G., Rademacher, C., Ottmann, C., & Grossmann, T. N.
- Affiliations
- Max Planck Society (DE)
- Max Planck Institute of Colloids and Interfaces (DE)
- Corresponding author
- Ottmann, Christian
- Grossmann, Tom N.
- Venue
- Angewandte Chemie International Edition
- Publisher
- Wiley
- Published
- 2014-02-06
- Volume
- 53
- Issue
- 9
- Pages
- 2489-2493
- ISSN
- 1433-7851 (ISSN-L)
- 1521-3773
- OpenAlex
- W2154151379
- Cited by
- 145
- References
- 27
- Citations by year
- 2026: 2 · 2025: 4 · 2024: 14 · 2023: 5 · 2022: 8 · 2021: 10 · 2020: 10 · 2019: 9 · 2018: 13 · 2017: 28 · 2016: 17 · 2015: 15 · 2014: 10
- FWCI
- 9.70
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Angewandte Chemie International Edition (publishedVersion)
- PubMed (publishedVersion)
- VU Research Portal (publishedVersion)
- TU/e Research Portal (submittedVersion)
- DORA PSI (Paul Scherrer Institute) (submittedVersion)
- Max Planck Digital Library (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chemical Synthesis and Analysis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Biochemical and Structural Characterization
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- constrained peptides, protein-protein interaction inhibitors, exoenzyme S, virulence factors, macrocyclic peptides, peptide stabilization
- MeSH terms
- Amino Acid Sequence, Bacterial Toxins, Calorimetry, Humans, Models, Molecular, Peptides, Cyclic, Protein Binding, Pseudomonas aeruginosa, Pseudomonas Infections, Thermodynamics, Protein Structure, Secondary, Crystallography, X-Ray, ADP Ribose Transferases, Macrocyclic Compounds, 14-3-3 Proteins, Hydrophobic and Hydrophilic Interactions, Protein Interaction Maps
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review