Coiled‐Coil Peptide Beacon: A Tunable Conformational Switch for Protein Detection
Open accessAbstract
The understanding of protein folding and assembly is of central importance for the design of proteins and enzymes with novel or improved functions. Minimalistic model systems, such as coiled-coils, provide an excellent platform to improve this understanding and to construct novel molecular devices. Along those lines, we designed a conformational switch that is composed of two coiled-coil forming peptides and a central binding epitope. In the absence of a binding partner, this switch adopts a hairpin-like conformation that opens upon receptor binding. Variation of the coiled-coil length modulates the strength of the intramolecular constraint. The two conformational states of this switch have been linked with characteristic fluorescent properties, which enables the detection of the receptor in real-time.
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Achieving the desired balance between multiple target coiled-coil states often requires several rounds of trial-and-error and a detailed understanding of the energetic factors that discriminate between alternative topologies and oligomerization states.
“While this has been accomplished in a number of cases,18−31 achieving the desired balance between multiple target coiled-coil states often requires several rounds of trial-and-error and a detailed understanding of the energetic factors that discriminate between alternative topologies and oligomerization states.”
From Assessment of the Topology and Oligomerisation States of Coiled Coils Using Metadynamics with Conformational Restraints (2025) · cites this paper as [27]
The paper’s Abstract (page unavailable) describes a coiled-coil switch with two conformational states and shows that changing coiled-coil length tunes its stability. It therefore supports the preceding, citation-attached point that such a switch has been achieved. It does not say that achieving the desired balance often requires several rounds of trial-and-error or detailed knowledge of energetic discrimination between alternative topologies and oligomerization states. (LLM, conf=0.82)
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Expanding the versatility of natural and de novo designed coiled coils and helical bundles
ElGamacy, M., & Alvarez, B. H. (2021) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2021.03.011 · Cited by 8 · see citing works
Rational Design of Phosphorylation-Responsive Coiled Coil-Peptide Assemblies
Thompson, H. F., Beesley, J. L., Langlands, H. D., Edgell, C. L., Savery, N. J., & Woolfson, D. N. (2023) · ACS Synthetic Biology · doi:10.1021/acssynbio.3c00064 · Cited by 8 · see citing works
“29 Most recently, two pH-inducible CC switches have also been reported.”
Peptidic “Molecular Beacon” for Collagen
Yang, J., Quan, Y., Ouyang, Y., Tan, K. O., Weber, R. T., Griffin, R. G., & Raines, R. T. (2024) · Biomacromolecules · doi:10.1021/acs.biomac.4c01000 · Cited by 7 · see citing works
Notari, E., Wood, C. W., & Michel, J. (2025) · Journal of Chemical Theory and Computation · doi:10.1021/acs.jctc.4c01695 · Cited by 4 · see citing works
Mechanische Verstärkung von Coiled Coils mit Lactam und Histidin‐Metall‐Klammern
López‐García, P., de Araujo, A. D., Bergues-Pupo, A. E., Tunn, I., Fairlie, D. P., & Blank, K. (2020) · Angewandte Chemie · doi:10.1002/ange.202006971 · Cited by 1 · see citing works
A Peptide-Based Trap for Metal Ions Studied by Electron Paramagnetic Resonance
Syryamina, V. N., Siano, Á., Formaggio, F., & Zotti, M. D. (2022) · Chemosensors · doi:10.3390/chemosensors10020071 · Cited by 2 · see citing works
Conformationally Locked Peptide–DNA Nanostructures for CRISPR‐Amplified Activity‐Based Sensing
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From Protein Structures to Functional Biomimetics
Grossmann, T. N., & Durukan, C. (2024) · Synlett · doi:10.1055/a-2308-1795 · Cited by 1 · see citing works
Self-citationSub-Picomolar Detection of SARS-CoV-2 RBD via Computationally-Optimized Peptide BeaconsPreprint
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“The reported peptide beacon designs consisted of the 21mer conjugated with a binding ligand and one of the three basic peptides: C13, C17, C21 (14).”
BackgroundResponsive Peptide-based Materials: Stimulation by Chemical and Biological Signals
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Intracellular artificial supramolecular architectures based on de novo designed peptides
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Fluorogenic Interacting Protein Stabilization for Orthogonal RNA Imaging
Zhou, W., Wu, M., Shao, X., Tang, L., Wang, F., & Jiang, J. (2025) · Angewandte Chemie · doi:10.1002/ange.202502350
- Authors
- Mueller, C., & Grossmann, T. N.
- Affiliations
- Vrije Universiteit Amsterdam (NL)
- Corresponding author
- Grossmann, Tom N.
- ORCID
- Grossmann, Tom N.
- Venue
- Angewandte Chemie International Edition
- Publisher
- Wiley
- Published
- 2018-11-28
- Volume
- 57
- Issue
- 52
- Pages
- 17079-17083
- ISSN
- 1433-7851 (ISSN-L)
- 1521-3773
- PMC
- PMC6391972
- OpenAlex
- W2899615021
- Cited by
- 25
- References
- 55
- Citations by year
- 2025: 5 · 2024: 6 · 2023: 2 · 2022: 3 · 2021: 4 · 2020: 4 · 2019: 1
- FWCI
- 0.80
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Angewandte Chemie International Edition (publishedVersion, cc-by-nc)
- Europe PMC (PubMed Central) (publishedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- VU Research Portal (publishedVersion, other-oa)
- Data Archiving and Networked Services (DANS) (submittedVersion, other-oa)
- Funders
- H2020 European Research Council (678623)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chemical Synthesis and Analysis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Biochemical and Structural Characterization
- Keywords
- coiled-coil peptides, conformational switching, protein detection, receptor binding, hairpin conformation, fluorescent biosensor, protein folding, protein assembly, molecular devices
- MeSH terms
- Fluorescence, Models, Molecular, Peptides, Protein Conformation, Proteins, Protein Folding
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