Thermodynamic electron equivalents model for bacterial yield prediction: Modifications and comparative evaluations
Abstract
Modifications are made to an earlier thermodynamic model (TEEM1) for prediction of maximum microbial yields from aerobic and anaerobic as well as heterotrophic and autotrophic growth. The revised model (TEEM2) corrects for lower yields found with aerobic oxidations of organic compounds where an oxygenase is involved and with growth on single‐carbon (C1) compounds. TEEM1 and TEEM2 are based on energy release and consumption as determined from the reduction potential or Gibbs free energy of ½‐reaction reduction equations together with losses of energy during energy transfer. Energy transfer efficiency is a key parameter needed to make predictions with TEEM2, and was determined through evaluations with extensive data sets on aerobic heterotrophic yield available in the literature. For compounds following normal catabolic pathways, the best‐fit value for energy transfer efficiency was 0.37, which permitted accurate predictions of growth with a precision of 15%–20% as determined by standard deviation. Using the same energy transfer efficiency, a similar precision, but somewhat less accuracy was found for organic compounds where oxidation involves an oxygenase (estimates 8% too high) and for C1 compounds (estimates 17% too high). In spite of the somewhat lower accuracy, the TEEM2 modifications resulted in improved predictions over TEEM1 and the comparison models. Biotechnol. Bioeng. 2007;97: 377–388. © 2006 Wiley Periodicals, Inc.
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Amerlinck, Y., Vanassche, E., Versluys, H., & Ingmar Nopens, A. (2016) · Water Science & Technology · doi:10.2166/wst.2016.489 · Cited by 3 · see citing works
INDISIM-Denitrification, an individual-based model for study the denitrification process
Granda, P. A. A., Gras, A., Gisbert, M. G., & Moulton, V. (2019) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-019-02245-8 · Cited by 3 · see citing works
Doloman, A., & Seefeldt, L. C. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.540378 · Cited by 3 · see citing works
Ni, B., & Yu, H. (2009) · AIChE Journal · doi:10.1002/aic.11875 · Cited by 3 · see citing works
9. Microbial Controls on the Biogeochemical Dynamics in the Subsurface
Thullner, M., & Regnier, P. A. G. (2019) · De Gruyter eBooks · doi:10.1515/9781501512001-010 · Cited by 3 · see citing works
An individual-based model for the study of Paracoccus denitrificans, a denitrifying bacterium
Granda, P. A. A., Gras, A., & Gisbert, M. G. (2013) · doi:10.13140/rg.2.1.3356.1126 · Cited by 3 · see citing works
- Authors
- McCarty, P. L.
- Affiliations
- Stanford University (US)
- Corresponding author
- McCarty, Perry L.
- ORCID
- McCarty, Perry L.
- Venue
- Biotechnology and Bioengineering
- Publisher
- Wiley
- Published
- 2006-11-06
- Volume
- 97
- Issue
- 2
- Pages
- 377-388
- ISSN
- 0006-3592 (ISSN-L)
- 1097-0290
- OpenAlex
- W2061493800
- Semantic Scholar
- 3ee22831d29010bf55e50808e54e52148573f94c
- Cited by
- 125
- References
- 15
- Citations by year
- 2026: 9 · 2025: 10 · 2024: 4 · 2023: 9 · 2022: 7 · 2021: 7 · 2020: 6 · 2019: 13 · 2018: 9 · 2017: 5 · 2016: 5 · 2015: 7 · 2014: 4 · 2013: 5 · 2012: 8
- FWCI
- 0.45
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Biotechnology and Bioengineering (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
- Physical Sciences › Chemistry › Physical and Theoretical Chemistry › thermodynamics and calorimetric analyses
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial metabolism and enzyme function
- Keywords
- energy transfer efficiency, Gibbs free energy, redox potential, oxygenase, anaerobic growth, autotrophic growth
- MeSH terms
- Bacteria, Electrons, Models, Biological, Models, Theoretical, Thermodynamics, Bacterial Physiological Phenomena
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