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Metabolic analysis of the asparagine and glutamine dynamics in an industrial Chinese hamster ovary fed-batch process

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Kirsch, Brian J., Bennun, Sandra V., Mendez, Adam, Johnson, Amy S., Wang, Hongxia, Qiu, Haibo, Li, Ning, Lawrence, Shawn M. +2 more·2022·Biotechnology and Bioengineering

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Abstract

Chinese hamster ovary (CHO) cell lines are grown in cultures with varying asparagine and glutamine concentrations, but further study is needed to characterize the interplay between these amino acids. By following 13 C‐glucose, 13 C‐glutamine, and 13 C‐asparagine tracers using metabolic flux analysis (MFA), CHO cell metabolism was characterized in an industrially relevant fed‐batch process under glutamine supplemented and low glutamine conditions during early and late exponential growth. For both conditions MFA revealed glucose as the primary carbon source to the tricarboxylic acid (TCA) cycle followed by glutamine and asparagine as secondary sources. Early exponential phase CHO cells prefer glutamine over asparagine to support the TCA cycle under the glutamine supplemented condition, while asparagine was critical for TCA activity for the low glutamine condition. Overall TCA fluxes were similar for both conditions due to the trade‐offs associated with reliance on glutamine and/or asparagine. However, glutamine supplementation increased fluxes to alanine, lactate and enrichment of glutathione, N ‐acetyl‐glucosamine and pyrimidine‐containing‐molecules. The late exponential phase exhibited reduced central carbon metabolism dominated by glucose, while lactate reincorporation and aspartate uptake were preferred over glutamine and asparagine. These 13 C studies demonstrate that metabolic flux is process time dependent and can be modulated by varying feed composition.

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  • Asparagine plays a central metabolic role in mammalian cell culture, acting as a nitrogen donor for amino acid and nucleotide biosynthesis, supporting protein translation, and contributing to TCA cycle intermediates that sustain biomass growth and productivity.

    “Asparagine plays a central metabolic role in mammalian cell culture, acting as a nitrogen donor for amino acid and nucleotide biosynthesis, supporting protein translation, and contributing to TCA cycle intermediates that sustain biomass growth and productivity [48].”

    From Soft sensing of intracellular states for CHO cell bioprocessing with Ensemble Kalman Filters (2026) · cites this paper as [48]

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  1. Ahn, W. S., & Antoniewicz, M. R. (2012). Towards dynamic metabolic flux analysis in CHO cell cultures. Biotechnology Journal, 7, 61– 74. 22102428
  2. Ahn, W. S., Crown, S. B., & Antoniewicz, M. R. (2016). Evidence for transketolase‐like TKTL1 flux in CHO cells based on parallel labeling experiments and 13 C‐metabolic flux analysis. Metabolic Engineering, 37, 72– 78. 27174718 PMC6053631
  3. Alberghina, L., & Gaglio, D. (2014). Redox control of glutamine utilization in cancer. Cell Death & Disease, 5, e1561. 25476909 PMC4454159
  4. Al‐Rubeai, M., & Singh, R. P. (1998). Apoptosis in cell culture. Current Opinion in Biotechnology, 9, 152– 156. 9588004
  5. Altamirano, C., Illanes, A., Becerra, S., Cairó, J. J., & Gòdia, F. (2006). Considerations on the lactate consumption by CHO cells in the presence of galactose. Journal of Biotechnology, 125, 547– 556. 16822573
  6. Anderson, P. M. (1981). Purification and properties of the glutamine‐ and N‐acetyl‐L‐glutamate‐dependent carbamoyl phosphate synthetase from liver of Squalus acanthias. Journal of Biological Chemistry, 256, 12228– 12238. 7298655
  7. Antoniewicz, M. R., Kelleher, J. K., & Stephanopoulos, G. (2007). Elementary metabolite units (EMU): A novel framework for modeling isotopic distributions. Metabolic Engineering, 9, 68– 86. 17088092 PMC1994654
  8. Arfin, S. M., Simpson, D. R., Chiang, C. S., Andrulis, I. L., & Hatfield, G. W. (1977). A role for asparaginyl‐tRNA in the regulation of asparagine synthetase in a mammalian cell line. Proceedings of the National Academy of Sciences, 74, 2367– 2369. PMC432172 18735
  9. Borys, M. C., Linzer, D. I. H., & Papoutsakis, E. T. (1994). Ammonia affects the glycosylation patterns of recombinant mouse placental lactogen‐I by Chinese hamster ovary cells in a pH‐dependent manner. Biotechnology and Bioengineering, 43, 505– 514. 18615748
  10. Burleigh, S. C., van de Laar, T., Stroop, C. J., van Grunsven, W. M., O'Donoghue, N., Rudd, P. M., & Davey, G. P. (2011). Synergizing metabolic flux analysis and nucleotide sugar metabolism to understand the control of glycosylation of recombinant protein in CHO cells. BMC Biotechnology, 11, 95. 22008152 PMC3219575
  11. Chakravarthi, S., & Bulleid, N. J. (2004). Glutathione is required to regulate the formation of native disulfide bonds within proteins entering the secretory pathway. Journal of Biological Chemistry, 279, 39872– 39879. 15254031
  12. Chen, P., & Harcum, S. W. (2005). Effects of amino acid additions on ammonium stressed CHO cells. Journal of Biotechnology, 117, 277– 186. 15862358
  13. Chiosa, L., Niculescu, V., Bonciocat, C., & Stancu, C. (1965). The protective action of N‐acetyl and N‐carbamyl derivatives of glutamic and aspartic acids against ammonia intoxication. Biochemical Pharmacology, 14, 1635– 1643. 5867516
  14. Chung, M.‐I., Lim, M.‐H., Lee, Y.‐J., Kim, I.‐H., Kim, I.‐Y., Kim, J.‐H., Chang, K.‐H., & Kim, H.‐J. (2003). Reduction of ammonia accumulation and improvement of cell viability by expression of urea cycle enzymes in Chinese hamster ovary cells. Journal of Microbiology and Biotechnology, 13, 217– 224.
  15. Crown, S. B., Long, C. P., & Antoniewicz, M. R. (2016). Optimal tracers for parallel labeling experiments and 13C metabolic flux analysis: A new precision and synergy scoring system. Metabolic Engineering, 38, 10– 18. 27267409 PMC5891732
  16. Dean, J., & Reddy, P. (2013). Metabolic analysis of antibody producing CHO cells in fed‐batch production. Biotechnology and Bioengineering, 110, 1735– 1747. 23296898
  17. DeBerardinis, R. J., Lum, J. J., Hatzivassiliou, G., & Thompson, C. B. (2008). The biology of cancer: Metabolic reprogramming fuels cell growth and proliferation. Cell Metabolism, 7, 11– 20. 18177721
  18. Dyring, C., Hansen, H. A., & Emborg, C. (1994). Observations on the influence of glutamine, asparagine and peptone on growth and t‐PA production of Chinese hamster ovary (CHO) cells. Cytotechnology, 16, 37– 42. 22359109
  19. Evans, D. R., & Guy, H. I. (2004). Mammalian pyrimidine biosynthesis: Fresh insights into an ancient pathway. Journal of Biological Chemistry, 279, 33035– 33038. 15096496
  20. Fan, L., Kadura, I., Krebs, L. E., Hatfield, C. C., Shaw, M. M., & Frye, C. C. (2012). Improving the efficiency of CHO cell line generation using glutamine synthetase gene knockout cells. Biotechnology and Bioengineering, 109, 1009– 1015. 22068567
  21. Fomina‐Yadlin, D., Gosink, J. J., McCoy, R., Follstad, B., Morris, A., Russell, C. B., & McGrew, J. T. (2014). Cellular responses to individual amino‐acid depletion in antibody‐expressing and parental CHO cell lines. Biotechnology and Bioengineering, 111, 965– 979. 24254056
  22. Franco, R., & Cidlowski, J. A. (2009). Apoptosis and glutathione: Beyond an antioxidant. Cell Death & Differentiation, 16, 1303– 1314. 19662025
  23. Freund, N., & Croughan, M. (2018). A simple method to reduce both lactic acid and ammonium production in industrial animal cell culture. International Journal of Molecular Sciences, 19, 385. PMC5855607 29382079
  24. Genzel, Y., Ritter, J. B., König, S., Alt, R., & Reichl, U. (2008). Substitution of glutamine by pyruvate to reduce ammonia formation and growth inhibition of mammalian cells. Biotechnology Progress, 21, 58– 69. 15903241
  25. Ghaffari, N., Jardon, M. A., Krahn, N., Butler, M., Kennard, M., Turner, R. F. B., Gopaluni, B., & Piret, J. M. (2020). Effects of cysteine, asparagine, or glutamine limitations in Chinese hamster ovary cell batch and fed‐batch cultures. Biotechnology Progress, 36, e2946. 31823468
  26. Gupta, S. K., Srivastava, S. K., Sharma, A., Nalage, V. H. H., Salvi, D., Kushwaha, H., Chitnis, N. B., & Shukla, P. (2017). Metabolic engineering of CHO cells for the development of a robust protein production platform. PLoS One, 12, e0181455. 28763459 PMC5538670
  27. Hansen, H. A., & Emborg, C. (1994). Influence of ammonium on growth, metabolism, and productivity of a continuous suspension Chinese hamster ovary cell culture. Biotechnology Progress, 10, 121– 124. 7764523
  28. Hayter, P. M., Curling, E. M. A., Baines, A. J., Jenkins, N., Salmon, I., Strange, P. G., & Bull, A. T. (1991). Chinese hamster ovary cell growth and interferon production kinetics in stirred batch culture. Applied Microbiology and Biotechnology, 34, 559– 564. 1367524
  29. Hills, A. E., Patel, A., Boyd, P., & James, D. C. (2001). Metabolic control of recombinant monoclonal antibody N‐glycosylation in GS‐NS0 cells. Biotechnology and Bioengineering, 75, 239– 251. 11536148
  30. Holden, H. M., Thoden, J. B., & Raushel, F. M. (1999). Carbamoyl phosphate synthetase: An amazing biochemical odyssey from substrate to product. Cellular and Molecular Life Sciences (CMLS), 56, 507– 522. 11212301 PMC11147029
  31. Hong, R. W., Rounds, J. D., Helton, W. S., Robinson, M. K., & Wilmore, D. W. (1992). Glutamine preserves liver glutathione after lethal hepatic injury. Annals of Surgery, 215, 114– 119. 1546897 PMC1242397
  32. Kishishita, S., Katayama, S., Kodaira, K., Takagi, Y., Matsuda, H., Okamoto, H., Takuma, S., Hirashima, C., & Aoyagi, H. (2015). Optimization of chemically defined feed media for monoclonal antibody production in Chinese hamster ovary cells. Journal of Bioscience and Bioengineering, 120, 78– 84. 25678240
  33. Kurano, N., Leist, C., Messi, F., Kurano, S., & Fiechter, A. (1990). Growth behavior of Chinese hamster ovary cells in a compact loop bioreactor. 2. Effects of medium components and waste products. Journal of Biotechnology, 15, 113– 128. 1366684
  34. Le, A., Lane, A. N., Hamaker, M., Bose, S., Gouw, A., Barbi, J., Tsukamoto, T., Rojas, C. J., Slusher, B. S., Zhang, H., Zimmerman, L. J., Liebler, D. C., Slebos, R. J. C., Lorkiewicz, P. K., Higashi, R. M., Fan, T. W. M., & Dang, C. V. (2012). Glucose‐independent glutamine metabolism via TCA cycling for proliferation and survival in B cells. Cell Metabolism, 15, 110– 121. 22225880 PMC3345194
  35. Levenberg, B. (1962). Role of L‐glutamine as donor of carbamyl nitrogen for the enzymatic synthesis of citrulline in Agaricus bisporus. Journal of Biological Chemistry, 237, 2590– 2598. 14464485
  36. Lu, W., Bennett, B. D., & Rabinowitz, J. D. (2008). Analytical strategies for LC–MS‐based targeted metabolomics. Journal of Chromatography B, 871, 236– 242. PMC2607197 18502704
  37. Mailloux, R. J., McBride, S. L., & Harper, M.‐E. (2013). Unearthing the secrets of mitochondrial ROS and glutathione in bioenergetics. Trends in Biochemical Sciences, 38, 592– 602. 24120033
  38. Makoff, A. J., & Radford, A. (1976). Glutamine utilization in both the arginine‐specific and pyrimidine‐specific carbamoyl phosphate synthase enzymes of Neurospora crassa. Molecular and General Genetics MGG, 149, 175– 178. 189179
  39. Mathur, D., Stratikopoulos, E., Ozturk, S., Steinbach, N., Pegno, S., Schoenfeld, S., Yong, R., Murty, V., Asara, J. M., Cantley, L. C., & Parsons, R. (2017). PTEN regulates glutamine flux to pyrimidine synthesis and sensitivity to dihydroorotate dehydrogenase inhibition. Cancer Discovery, 7, 380– 390. 28255082 PMC5562025
  40. McAtee Pereira, A. G., Walther, J. L., Hollenbach, M., & Young, J. D. (2018). 13C flux analysis reveals that rebalancing medium amino acid composition can reduce ammonia production while preserving central carbon metabolism of CHO cell cultures. Biotechnology Journal, 13, e1700518. 29405605
  41. Nargund, S., Qiu, J., & Goudar, C. T. (2015). Elucidating the role of copper in CHO cell energy metabolism using 13C metabolic flux analysis. Biotechnology Progress, 31, 1179– 1186. 26097228
  42. Nyberg, G. B., Balcarcel, R. R., Follstad, B. D., Stephanopoulos, G., & Wang, D. I. C. (1999). Metabolism of peptide amino acids by Chinese hamster ovary cells grown in a complex medium. Biotechnology and Bioengineering, 62, 324– 335. 10099544
  43. Orellana, C. A., Marcellin, E., Schulz, B. L., Nouwens, A. S., Gray, P. P., & Nielsen, L. K. (2015). High‐antibody‐producing chinese hamster ovary cells up‐regulate intracellular protein transport and glutathione synthesis. Journal of Proteome Research, 14, 609– 618. 25495469
  44. Ozturk, S. S., Riley, M. R., & Palsson, B. O. (1992). Effects of ammonia and lactate on hybridoma growth, metabolism, and antibody production. Biotechnology and Bioengineering, 39, 418– 431. 18600963
  45. Pels Rijcken, W. R., Overdijk, B., van den Eijnden, D. H., & Ferwerda, W. (1993). Pyrimidine nucleotide metabolism in rat hepatocytes: evidence for compartmentation of nucleotide pools. Biochemical Journal, 293, 207– 213. 8328961 PMC1134341
  46. Schne, Ider, M., M., IanW, & von Stockar U. (1996). The importance of ammonia in mammalian cell culture. Journal of Biotechnology, 46, 161– 185. 8672289
  47. Seewöster, T., & Lehmann, J. (1995). Influence of targeted asparagine starvation on extra‐ and intracellular amino acid pools of cultivated Chinese hamster ovary cells. Applied Microbiology and Biotechnology, 44, 344– 350. 8597537
  48. Sheikh, K., Förster, J., & Nielsen, L. K. (2005). Modeling hybridoma cell metabolism using a generic genome‐scale metabolic model of Mus musculus. Biotechnology Progress, 21, 112– 121. 15903248
  49. Sies, H. (1999). Glutathione and its role in cellular functions. Free Radical Biology and Medicine, 27, 916– 921. 10569624
  50. Széliová, D., Ruckerbauer, D. E., Galleguillos, S. N., Petersen, L. B., Natter, K., Hanscho, M., Troyer, C., Causon, T., Schoeny, H., Christensen, H. B., Lee, D.‐Y., Lewis, N. E., Koellensperger, G., Hann, S., Nielsen, L. K., Borth, N., & Zanghellini, J. (2020). What CHO is made of: Variations in the biomass composition of Chinese hamster ovary cell lines. Metabolic Engineering, 61, 288– 300. 32619503
  51. Taschwer, M., Hackl, M., Hernández Bort, J. A., Leitner, C., Kumar, N., Puc, U., Grass, J., Papst, M., Kunert, R., Altmann, F., & Borth, N. (2012). Growth, productivity and protein glycosylation in a CHO EpoFc producer cell line adapted to glutamine‐free growth. Journal of Biotechnology, 157, 295– 303. 22178781
  52. Wahrheit, J., Nicolae, A., & Heinzle, E. (2014). Dynamics of growth and metabolism controlled by glutamine availability in Chinese hamster ovary cells. Applied Microbiology and Biotechnology, 98, 1771– 1783. 24362913
  53. Walsh, G. (2014). Biopharmaceutical benchmarks 2014. Nature Biotechnology, 32, 992– 1000. 25299917
  54. Warburg, O. (1956). On the origin of cancer cells. Science, 123, 309– 314. 13298683
  55. Xu, P., Dai, X.‐P., Graf, E., Martel, R., & Russell, R. (2014). Effects of glutamine and asparagine on recombinant antibody production using CHO‐GS cell lines. Biotechnology Progress, 30, 1457– 1468. 25079388
  56. Young, J. D. (2014). INCA: A computational platform for isotopically non‐stationary metabolic flux analysis. Bioinformatics, 30, 1333– 1335. 24413674 PMC3998137
  57. Young, J. D., Walther, J. L., Antoniewicz, M. R., Yoo, H., & Stephanopoulos, G. (2008). An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis. Biotechnology and Bioengineering, 99, 686– 699. 17787013
  58. Zhang, F., Sun, X., Yi, X., & Zhang, Y. (2006). Metabolic characteristics of recombinant Chinese hamster ovary cells expressing glutamine synthetase in presence and absence of glutamine. Cytotechnology, 51, 21– 28. 19002891 PMC3449477
  59. Zhang, J., Fan, J., Venneti, S., Cross, J. R., Takagi, T., Bhinder, B., Djaballah, H., Kanai, M., Cheng, E. H., Judkins, A. R., Pawel, B., Baggs, J., Cherry, S., Rabinowitz, J. D., & Thompson, C. B. (2014). Asparagine plays a critical role in regulating cellular adaptation to glutamine depletion. Molecular Cell, 56, 205– 218. 25242145 PMC4224619
  60. Zupke, C., Sinskey, A. J., & Stephanopoulos, G. (1995). Intracellular flux analysis applied to the effect of dissolved oxygen on hybridomas. Applied Microbiology and Biotechnology, 44, 27– 36. 8579834

Cited by

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Authors
Kirsch, B. J., Bennun, S. V., Mendez, A., Johnson, A. S., Wang, H., Qiu, H., Li, N., Lawrence, S. M., Bak, H., & Betenbaugh, M. J.
Affiliations
  • Johns Hopkins University (US)
  • Regeneron (United States) (US)
Corresponding author
Bennun, Sandra V.
Venue
Biotechnology and Bioengineering
Publisher
Wiley
Published
2022-01-06
Volume
119
Issue
3
Pages
807-819
ISSN
  • 0006-3592 (ISSN-L)
  • 1097-0290
OpenAlex
W3214722919
Cited by
39
References
5
Citations by year
2026: 11 · 2025: 10 · 2024: 9 · 2023: 6 · 2022: 2 · 2021: 1
FWCI
1.41
Type
journal article
Language
en
Open access
Locations
  • Biotechnology and Bioengineering (publishedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Viral Infectious Diseases and Gene Expression in Insects
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer, Hypoxia, and Metabolism
Keywords
CHO cells, asparagine, glutamine, fed-batch fermentation, metabolic flux analysis, TCA cycle, carbon source utilization, glutamine supplementation, 13C tracer, lactate metabolism, glutathione, N-acetylglucosamine, pyrimidine metabolism, exponential growth phase, cellular metabolism
MeSH terms
Animals, Asparagine, Cricetulus, Glucose, Glutamine, Cricetinae, CHO Cells, Lactic Acid

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