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Purification and cloning of a nucleotide excision repair complex involving the xeroderma pigmentosum group C protein and a human homologue of yeast RAD23.
Open accessAbstract
Complementation group C of xeroderma pigmentosum (XP) represents one of the most common forms of this cancer-prone DNA repair syndrome. The primary defect is located in the subpathway of the nucleotide excision repair system, dealing with the removal of lesions from the non-transcribing sequences ('genome-overall' repair). Here we report the purification to homogeneity and subsequent cDNA cloning of a repair complex by in vitro complementation of the XP-C defect in a cell-free repair system containing UV-damaged SV40 minichromosomes. The complex has a high affinity for ssDNA and consists of two tightly associated proteins of 125 and 58 kDa. The 125 kDa subunit is an N-terminally extended version of previously reported XPCC gene product which is thought to represent the human homologue of the Saccharomyces cerevisiae repair gene RAD4. The 58 kDa species turned out to be a human homologue of yeast RAD23. Unexpectedly, a second human counterpart of RAD23 was identified. All RAD23 derivatives share a ubiquitin-like N-terminus. The nature of the XP-C defect implies that the complex exerts a unique function in the genome-overall repair pathway which is important for prevention of skin cancer.
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“hHR23B-XPC complex or only XPC exhibits a similar high affinity for both UV-induced single-stranded DNA (ssDNA) and double-stranded DNA (dsDNA) [230, 259], preferentially binds to DNA with various lesions [259] and even to small bubble structures with or without a lesion [260].”
From Molecular Mechanisms of Ultraviolet Radiation‐Induced DNA Damage and Repair (2010) · cites this paper as [230]
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“Both hHR23A and -B harbor a ubiquitin-like moiety at their amino terminus [230].”
From Molecular Mechanisms of Ultraviolet Radiation‐Induced DNA Damage and Repair (2010) · cites this paper as [230]
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Citations
Cites
Bradford, M. M. (1976) · Analytical Biochemistry · doi:10.1016/0003-2697(76)90527-3 · Cited by 255,302
Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4
LAEMMLI, U. K. (1970) · Nature · doi:10.1038/227680a0 · Cited by 249,961
Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
Molecular cloning: A laboratory manual
Deininger, P. L. (1990) · Analytical Biochemistry · doi:10.1016/0003-2697(90)90595-z · Cited by 84,684
DNA sequencing with chain-terminating inhibitors
Sanger, F., Nicklen, S., & Coulson, A. R. (1977) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.74.12.5463 · Cited by 68,572
Raza, H., John, A., & Nemmar, A. (2013) · Cellular Physiology and Biochemistry · doi:10.1159/000350087 · Cited by 47,311
Structural features in eukaryotic mRNAs that modulate the initiation of translation.
Kozak, M. (1991) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)54860-2 · Cited by 1,826
Defective repair replication of DNA in xeroderma pigmentosum
CLEAVER, J. E. (1968) · Nature · doi:10.1038/218652a0 · Cited by 1,729
λ ZAP: a bacteriophage λ expression vector within vivoexcision properties
Short, J. M., Fernandez, J. M., Sorge, J. A., & Huse, W. D. (1988) · Nucleic Acids Research · doi:10.1093/nar/16.15.7583 · Cited by 1,365
Kraemer, K. H. (1987) · Archives of Dermatology · doi:10.1001/archderm.123.2.241 · Cited by 1,216
DNA Repair Helicase: a Component of BTF2 (TFIIH) Basic Transcription Factor
Schaeffer, L., Roy, R., Humbert, S., Moncollin, V., Vermeulen, W., Hoeijmakers, J. H. J., Chambon, P., & Egly, J. (1993) · Science · doi:10.1126/science.8465201 · Cited by 794
Sequence identification of 2,375 human brain genes
Adams, M. D., Dubnick, M., Kerlavage, A. R., Moreno, R., Kelley, J. M., Utterback, T. R., Nagle, J. W., Fields, C., & Venter, J. C. (1992) · Nature · doi:10.1038/355632a0 · Cited by 754
Troelstra, C., van Gool, A., de Wit, J., Vermeulen, W., Bootsma, D., & Hoeijmakers, J. H. J. (1992) · Cell · doi:10.1016/0092-8674(92)90390-x · Cited by 729
Self-citationFinley, D. J., Bartel, B., & Varshavsky, A. J. (1989) · Nature · doi:10.1038/338394a0 · Cited by 720
THE UBIQUITIN-CONJUGATION SYSTEM
Jentsch, S. (1992) · Annual Review of Genetics · doi:10.1146/annurev.ge.26.120192.001143 · Cited by 564
Identification of a set of genes with developmentally down-regulated expression in the mouse brain
Kumar, S., Tomooka, Y., & Noda, M. (1992) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(92)91747-e · Cited by 552
Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression
Okubo, K., Hori, N., Matoba, R., Niiyama, T., Fukushima, A., Kojima, Y., & Matsubara, K. (1992) · Nature Genetics · doi:10.1038/ng1192-173 · Cited by 522
Complementation of the xeroderma pigmentosum DNA repair defect in cell-free extracts
Wood, R. D., Robins, P., & Lindahl, T. L. (1988) · Cell · doi:10.1016/0092-8674(88)90491-6 · Cited by 445
Nucleotide excision repair in Escherichia coli
Houten, B. V. (1990) · Microbiological Reviews · doi:10.1128/mr.54.1.18-51.1990 · Cited by 443
Huang, J. C., Svoboda, D. L., Reardon, J. T., & Sancar, A. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.8.3664 · Cited by 437
Weeda, G., van Ham, R. C. A., Vermeulen, W., Bootsma, D., van der Eb, A. J., & Hoeijmakers, J. H. J. (1990) · Cell · doi:10.1016/0092-8674(90)90122-u · Cited by 432
Self-citationTanaka, K., Miura, N., Satokata, I., Miyamoto, I., Yoshida, M. C., Satoh, Y., Kondo, S., Yasui, A., Okayama, H., & Okada, Y. (1990) · Nature · doi:10.1038/348073a0 · Cited by 388
Self-citationDeoxyribonucleic acid repair in the yeast Saccharomyces cerevisiae
Friedberg, E. C. (1988) · Microbiological Reviews · doi:10.1128/mr.52.1.70-102.1988 · Cited by 375
Venema, J., van Hoffen, A., Karcagi, V., Natarajan, A. T., van Zeeland, A. A., & Mullenders, L. H. F. (1991) · Molecular and Cellular Biology · doi:10.1128/mcb.11.8.4128 · Cited by 319
Nucleotide excision repair II: from yeast to mammals
Hoeijmakers, J. H. J. (1993) · Trends in Genetics · doi:10.1016/0168-9525(93)90121-w · Cited by 304
[35] In Vitro transcription: Whole-cell extract
Manley, J. L., Fire, A. Z., Samuels, M. E., & Sharp, P. A. (1983) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/0076-6879(83)01038-1 · Cited by 294
Structural and functional conservation of two human homologs of the yeast DNA repair gene RAD6.
Koken, M. H. M., Reynolds, P. R., Jaspers-Dekker, I., Prakash, L., Prakash, S., Bootsma, D., & Hoeijmakers, J. H. J. (1991) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.88.20.8865 · Cited by 263
Self-citationWatkins, J. F., Sung, P., Prakash, L., & Prakash, S. (1993) · Molecular and Cellular Biology · doi:10.1128/mcb.13.12.7757 · Cited by 248
Expression cloning of a human DNA repair gene involved in xeroderma pigmentosum group C
Legerski, R. J., & Peterson, C. A. (1992) · Nature · doi:10.1038/359070a0 · Cited by 234
Venema, J., van Hoffen, A., Natarajan, A. T., van Zeeland, A. A., & Mullenders, L. H. F. (1990) · Nucleic Acids Research · doi:10.1093/nar/18.3.443 · Cited by 224
Collins, A. R. (1993) · Mutation Research/DNA Repair · doi:10.1016/0921-8777(93)90062-l · Cited by 196
van Vuuren, A. J., Appeldoorn, E., Odijk, H., Yasui, A., Jaspers, N. G. J., Bootsma, D., & Hoeijmakers, J. H. J. (1993) · The EMBO Journal · doi:10.1002/j.1460-2075.1993.tb06044.x · Cited by 183
Self-citationCo‐correction of the ERCC1, ERCC4 and xeroderma pigmentosum group F DNA repair defects in vitro.
Biggerstaff, M., Szymkowski, D. E., & Wood, R. D. (1993) · The EMBO Journal · doi:10.1002/j.1460-2075.1993.tb06043.x · Cited by 171
Flejter, W. L., McDaniel, L., Johns, D., Friedberg, E. C., & Schultz, R. A. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.1.261 · Cited by 170
Sancar, A., & Hearst, J. E. (1993) · Science · doi:10.1126/science.8451638 · Cited by 158
Schiestl, R. H., & Prakash, S. (1990) · Molecular and Cellular Biology · doi:10.1128/mcb.10.6.2485 · Cited by 153
Banerji, J., Sands, J. F., Strominger, J. L., & Spies, T. A. (1990) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.87.6.2374 · Cited by 146
Sibghat-Ullah, Husain, I., Carlton, W., & Sancar, A. (1989) · Nucleic Acids Research · doi:10.1093/nar/17.12.4471 · Cited by 142
Comparison of the three-dimensional structures of human, yeast, and oat ubiquitin.
Vijay‐Kumar, S., Bugg, C. E., Wilkinson, K. D., Vierstra, R. D., Hatfield, P. M., & Cook, W. J. (1987) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)45583-4 · Cited by 138
Characterization of molecular defects in xeroderma pigmentosum group C
Li, L., Bales, E. S., Peterson, C. A., & Legerski, R. J. (1993) · Nature Genetics · doi:10.1038/ng1293-413 · Cited by 136
Nucleotide excision repair I: from E. coli to yeast
Hoeijmakers, J. H. J. (1993) · Trends in Genetics · doi:10.1016/0168-9525(93)90164-d · Cited by 125
Identical defects in DNA repair in xeroderma pigmentosum group G and rodent ERCC group 5
O’Donovan, A., & Wood, R. D. (1993) · Nature · doi:10.1038/363185a0 · Cited by 123
Hanawalt, P. C., & Mellon, I. (1993) · Current Biology · doi:10.1016/0960-9822(93)90156-i · Cited by 102
Characterization of components released by alkali disruption of simian virus 40
Christiansen, G., Landers, T. A., Griffith, J. D., & Berg, P. R. (1977) · Journal of Virology · doi:10.1128/jvi.21.3.1079-1084.1977 · Cited by 101
Kantor, G. J., Barsalou, L., & Hanawalt, P. C. (1990) · Mutation Research/DNA Repair · doi:10.1016/0921-8777(90)90071-c · Cited by 92
Venema, J., van Hoffen, A., Karcagi, V., et al. (1991) · Molecular and Cellular Biology · doi:10.1128/mcb.11.8.4128-4134.1991 · Cited by 92
Two related localized mRNAs from Xenopus laevis encode ubiquitin-like fusion proteins
Linnen, J. M., Bailey, C. P., & Weeks, D. L. (1993) · Gene · doi:10.1016/0378-1119(93)90561-g · Cited by 90
Bardwell, L., Cooper, A., & Friedberg, E. C. (1992) · Molecular and Cellular Biology · doi:10.1128/mcb.12.7.3041 · Cited by 89
Bailly, V., Sommers, C. H., Sung, P., Prakash, L., & Prakash, S. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.17.8273 · Cited by 76
A "housekeeping" gene on the X chromosome encodes a protein similar to ubiquitin.
Toniolo, D., Persico, M. G., & Alcalay, M. (1988) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.85.3.851 · Cited by 74
van Duin, M., Vredeveldt, G., Mayne, L. V., Odijk, H., Vermeulen, W., Klein, B., Weeda, G., Hoeijmakers, J. H. J., Bootsma, D., & Westerveld, A. (1989) · Mutation Research/DNA Repair · doi:10.1016/0921-8777(89)90059-1 · Cited by 72
Self-citationSugasawa, K., Masutani, C., & Hanaoka, F. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)52982-3 · Cited by 70
Self-citationPerozzi, G., & Prakash, S. (1986) · Molecular and Cellular Biology · doi:10.1128/mcb.6.5.1497 · Cited by 67
Kas, K., Michiels, L., & Merregaert, J. (1992) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(92)91286-y · Cited by 64
Madura, K., & Prakash, S. (1990) · Nucleic Acids Research · doi:10.1093/nar/18.16.4737 · Cited by 63
Melnick, L. M., & Sherman, F. (1993) · Journal of Molecular Biology · doi:10.1006/jmbi.1993.1518 · Cited by 38
Fleer, R., Nicolet, C. M., Pure, G. A., & Friedberg, E. C. (1987) · Molecular and Cellular Biology · doi:10.1128/mcb.7.3.1180 · Cited by 37
Gietz, R. D., & Prakash, S. (1988) · Gene · doi:10.1016/0378-1119(88)90186-2 · Cited by 32
Riboni, R., Botta, E., Stefanini, M., Numata, M., & Yasui, A. (1992) · PubMed · Cited by 30
DNA primase-DNA polymerase α assembly from mouse FM3A cells
Suzuki, M., Enomoto, T., Masutani, C., Hanaoka, F., Yamada, M.-A., & Ui, M. (1989) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)81767-7 · Cited by 29
Self-citationMasutani, C., Sugasawa, K., Asahina, H., Tanaka, K., & Hanaoka, F. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)52983-5 · Cited by 27
Self-citationBardwell, L., Cooper, A., & Friedberg, E. C. (1992) · Molecular and Cellular Biology · doi:10.1128/mcb.12.7.3041-3049.1992 · Cited by 26
Perozzi, G., & Prakash, S. (1986) · Molecular and Cellular Biology · doi:10.1128/mcb.6.5.1497-1507.1986 · Cited by 23
Yanagisawa, J., Seki, M., Ui, M., & Enomoto, T. (1992) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)50564-6 · Cited by 10
Self-citationFleer, R., Nicolet, C. M., Pure, G. A., & Friedberg, E. C. (1987) · Molecular and Cellular Biology · doi:10.1128/mcb.7.3.1180-1192.1987 · Cited by 8
Research works printed but not linked: 7
- Bailly,V., Sommers,C.H., Sung,P., Prakash,L. and Prakash,S. (1992) Proc. Natl Acad. Sci. USA, 89, 8273 -8277.
- Baneri,J., Sands,J., Strominger,J.L. and Spies,T. (1990) Proc. NatlAcad. Sci. USA, 87, 2374-2378.
- Flejter,W.L., McDaniel,L.D., Johns,D., Friedberg,E.C. and Schultz,R.A. (1992) Proc. Natl Acad. Sci. USA, 89, 261 -265.
- Huang,J.-C., Svoboda,D.L., Reardon,J.T. and Sancar,A. (1992) Proc. Natl Acad. Sci. USA, 89, 3664-3668.
- Koken,M.H.M., Reynolds,P., Jaspers-Dekker,I., Prakash,L., Prakash,S., Bootsma,D. and Hoeijmakers,J.H.J. (1991) Proc. NatlAcad. Sci. USA, 88, 8865-8869.
- Sanger,F., Nicklen,S. and Coulson,A.R. (1977) Proc. NatlAcad. Sci. USA, 74, 5463-5467.
- Toniolo,D., Persico,M. and Alcalay,M. (1988) Proc. NatlAcad. Sci. USA, 85, 851-855.
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BackgroundThe XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η
Masutani, C., Kusumoto, R., Yamada, A., Dohmae, N., Yokoi, M., Yuasa, M., Araki, M., Iwai, S., Takio, K., & Hanaoka, F. (1999) · Nature · doi:10.1038/21447 · Cited by 1,292
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Metadata
- Authors
- Masutani, C., Sugasawa, K., Yanagisawa, J., Sonoyama, T., Ui, M., Enomoto, T., Takio, K., Tanaka, K., van der Spek, P. J., & Bootsma, D.
- Affiliations
- RIKEN (JP)
- Venue
- The EMBO Journal
- Published
- 1994-04-01
- Volume
- 13
- Issue
- 8
- Pages
- 1831-1843
- ISSN
- 0261-4189 (ISSN-L)
- 1460-2075
- PMC
- PMC395023
- OpenAlex
- W1005028082
- Cited by
- 400
- References
- 70
- Citations by year
- 2026: 5 · 2025: 2 · 2024: 6 · 2023: 6 · 2022: 5 · 2021: 7 · 2020: 8 · 2019: 9 · 2018: 5 · 2017: 7 · 2016: 13 · 2015: 9 · 2014: 7 · 2013: 5 · 2012: 9
- FWCI
- 9.75
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- The EMBO Journal (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- EUR Research Repository (Erasmus University Rotterdam) (submittedVersion)
- Funders
- Cosmetology Research Foundation
- RIKEN
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
- Keywords
- xeroderma pigmentosum group C, nucleotide excision repair, Rad23, Rad4, UV-damaged DNA, single-stranded DNA binding, cDNA cloning, protein complex purification, skin cancer prevention, SV40 minichromosomes
- MeSH terms
- Amino Acid Sequence, Base Sequence, DNA Damage, DNA Repair, DNA-Binding Proteins, DNA, Viral, Fungal Proteins, HeLa Cells, Humans, Models, Molecular, Molecular Sequence Data, Transglutaminases, Simian virus 40, Ubiquitins, Ultraviolet Rays, Sequence Homology, Amino Acid, DNA, Complementary, Schizosaccharomyces pombe Proteins, DNA Repair Enzymes
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