The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
A revised set of potentials for β‐turn formation in proteins
Open accessAbstract
Three thousand eight hundred ninety‐nine β‐turns have been identified and classified using a nonhomologous data set of 205 protein chains. These were used to derive β‐turn positional potentials for turn types I' and II' for the first time and to provide updated potentials for formation of the more common types I, II, and VIII. Many of the sequence preferences for each of the 4 positions in turns can be rationalized in terms of the formation of stabilizing hydrogen bonds, preferences for amino acids to adopt a particular conformation in ϕ, ψ space, and the involvement of turn types I' and II' in β‐hairpins. Only 1,632 (42%) of the turns occur in isolation; the remainder have at least 1 residue in common with another turn and have hence been classified as multiple turns. Several types of multiple turn have been identified and analyzed.
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Cites
PROCHECK: a program to check the stereochemical quality of protein structures
Laskowski, R. A., MacArthur, M. W., Moss, D. S., & Thornton, J. M. (1993) · Journal of Applied Crystallography · doi:10.1107/s0021889892009944 · Cited by 24,581
Self-citationKabsch, W., & Sander, C. (1983) · Biopolymers · doi:10.1002/bip.360221211 · Cited by 15,320
Chou, P. Y., & Fasman, G. D. (1974) · Biochemistry · doi:10.1021/bi00699a001 · Cited by 2,172
Cited by
Modeling of loops in protein structures
Fiser, A., Do, R. K. G., & Šali, A. (2000) · Protein Science · doi:10.1110/ps.9.9.1753 · Cited by 2,116
Hepcidin Revisited, Disulfide Connectivity, Dynamics, and Structure
Jordan, J. B., Poppe, L., Haniu, M., Arvedson, T., Syed, R., Li, V., Kohno, H., Kim, H., Schnier, P. D., Harvey, T. S., et al. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.017764 · Cited by 214
Loops Govern SH2 Domain Specificity by Controlling Access to Binding Pockets
Kaneko, T., Huang, H., Zhao, B., Li, L., Liu, H., Voss, C. K., Wu, C., Schiller, M. R., & Li, S. S.-C. (2010) · Science Signaling · doi:10.1126/scisignal.2000796 · Cited by 146
Ramı́rez-Alvarado, M., Blanco, F. J., Niemann, H., & Serrano, L. (1997) · Journal of Molecular Biology · doi:10.1006/jmbi.1997.1347 · Cited by 136
Class IIa Bacteriocins: Diversity and New Developments
Cui, Y., Zhang, C., Wang, Y., Shi, J., Zhang, L., Ding, Z., Qu, X., & Cui, H. (2012) · International Journal of Molecular Sciences · doi:10.3390/ijms131216668 · Cited by 125
Metadata
- Authors
- Hutchinson, E. G., & Thornton, J. M.
- Venue
- Protein Science
- Publisher
- Wiley
- Published
- 1994-12
- Volume
- 3
- Issue
- 12
- Pages
- 2207-2216
- ISSN
- 0961-8368 (ISSN-L)
- 1469-896X
- OpenAlex
- W2074655761
- Cited by
- 937
- References
- 3
- FWCI
- 5.88
- Type
- journal article
- Language
- en
- Open access
- bronze
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