Cited by 8Protein Structure and DynamicsEnzyme Structure and FunctionGenomics and Rare Diseases

Computational studies on the functional and structural impact of pathogenic mutations in enzymes

Open access
Dissanayake, Upeksha C., Roy, Arkanil, Maghsoud, Yazdan, Polara, Sarthi, Debnath, Tanay, Cisneros, G. Andrés·2025·Protein Science

Published version of a preprint

Abstract

Enzymes are critical biological catalysts involved in maintaining the intricate balance of metabolic processes within living organisms. Mutations in enzymes can result in disruptions to their functionality that may lead to a range of diseases. This review focuses on computational studies that investigate the effects of disease‐associated mutations in various enzymes. Through molecular dynamics simulations, multiscale calculations, and machine learning approaches, computational studies provide detailed insights into how mutations impact enzyme structure, dynamics, and catalytic activity. This review emphasizes the increasing impact of computational simulations in understanding molecular mechanisms behind enzyme (dis)function by highlighting the application of key computational methodologies to selected enzyme examples, aiding in the prediction of mutation effects and the development of therapeutic strategies.

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Crossref · 10.1002/pro.70081

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Authors
Dissanayake, U. C., Roy, A., Maghsoud, Y., Polara, S., Debnath, T., & Cisneros, G. A.
Affiliations
The University of Texas at Dallas (US)
Corresponding author
Cisneros, G. Andrés
Venue
Protein Science
Publisher
Wiley
Published
2025-03-21
Volume
34
Issue
4
Pages
e70081-e70081
ISSN
  • 0961-8368 (ISSN-L)
  • 1469-896X
OpenAlex
W4408745382
Cited by
8
References
6
Citations by year
2026: 5 · 2025: 3
FWCI
0.70
Type
journal article
Language
en
Open access
Locations
  • Protein Science (publishedVersion)
  • ChemRxiv (acceptedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • PubMed Central (publishedVersion)
Funders
  • National Institutes of Health (R35GM15195)
  • National Science Foundation (ACCESS BIO240365, OAC‐2117247)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
  • Physical Sciences › Materials Science › Materials Chemistry › Enzyme Structure and Function
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
Keywords
enzyme mutations, disease-associated mutations, enzyme dysfunction, catalytic activity, molecular dynamics simulation, multiscale modeling
MeSH terms
Machine Learning, Enzymes, Humans, Mutation, Protein Conformation, Computational Biology, Molecular Dynamics Simulation

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