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luxA Gene From Enhygromyxa salina Encodes a Functional Homodimeric Luciferase
Open accessPublished version of a preprint
Abstract
Several clades of luminescent bacteria are known currently. They all contain similar lux operons, which include the genes luxA and luxB encoding a heterodimeric luciferase. The aldehyde oxygenation reaction is presumed to be catalyzed primarily by the subunit LuxA, whereas LuxB is required for efficiency and stability of the complex. Recently, genomic analysis identified a subset of bacterial species with rearranged lux operons lacking luxB . Here, we show that the product of the luxA gene from the reduced luxACDE operon of Enhygromyxa salina is luminescent upon addition of aldehydes both in vivo in Escherichia coli and in vitro. Overall, Es LuxA is much less bright compared with luciferases from Aliivibrio fischeri ( Af LuxAB) and Photorhabdus luminescens ( Pl LuxAB), and most active with medium‐chain C4–C9 aldehydes. Crystal structure of Es LuxA determined at the resolution of 2.71 Å reveals a (β/α) 8 TIM‐barrel fold, characteristic for other bacterial luciferases, and the protein preferentially forms a dimer in solution. The mobile loop residues 264–293, which form a β‐hairpin or a coil in Vibrio harveyi LuxA, form α‐helices in Es LuxA. Phylogenetic analysis shows Es LuxA and related proteins may be bacterial protoluciferases that arose prior to duplication of the luxA gene and its speciation to luxA and luxB in the previously described luminescent bacteria. Our work paves the way for the development of new bacterial luciferases that have an advantage of being encoded by a single gene.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Metadata
- Authors
- Yudenko, A., Bazhenov, S. V., Aleksenko, V. A., Goncharov, I. M., Semenov, O., Remeeva, A., Nazarenko, V. V., Kuznetsova, E., Fomin, V. V., Konopleva, M. N., Al Ebrahim, R., Sluchanko, N. N., Ryzhykau, Y., Semenov, Y. S., Kuklin, A., Manukhov, I. V., & Gushchin, I.
- Affiliations
- Moscow Institute of Physics and Technology (RU)
- Research Center for Molecular Mechanisms of Aging and Age‐Related Diseases Moscow Institute of Physics and Technology Dolgoprudny Russia
- Russian Academy of Sciences (RU)
- Corresponding author
- Gushchin, Ivan
- ORCID
- Venue
- Proteins: Structure, Function, and Bioinformatics
- Publisher
- Wiley
- Published
- 2024-08-22
- Volume
- 92
- Issue
- 12
- Pages
- 1449-1458
- ISSN
- 0887-3585 (ISSN-L)
- 1097-0134
- OpenAlex
- W4401753900
- Cited by
- 5
- References
- 1
- Citations by year
- 2026: 2 · 2025: 3
- FWCI
- 0.68
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Licence
- Locations
- Proteins Structure Function and Bioinformatics (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Funders
- Russian Science Foundation (21‐64‐00018)
- Ministry of Science and Higher Education of the Russian Federation (075‐15‐2021‐1354, 075‐03‐2024‐117)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › bioluminescence and chemiluminescence research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bacterial biofilms and quorum sensing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
- Keywords
- Enhygromyxa salina, bacterial bioluminescence, lux operon, TIM-barrel fold, crystal structure, gene duplication, phylogenetic analysis, Escherichia coli expression
- MeSH terms
- Aldehydes, Amino Acid Sequence, Bacterial Proteins, Escherichia coli, Models, Molecular, Operon, Phylogeny, Crystallography, X-Ray, Photorhabdus, Aliivibrio fischeri, Luciferases, Bacterial, Protein Multimerization
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