The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
Knowledge‐based protein secondary structure assignment
Abstract
We have developed an automatic algorithm STRIDE for protein secondary structure assignment from atomic coordinates based on the combined use of hydrogen bond energy and statistically derived backbone torsional angle information. Parameters of the pattern recognition procedure were optimized using designations provided by the crystallographers as a standard‐of‐truth. Comparison to the currently most widely used technique DSSP by Kabsch and Sander (Biopolymers 22:2577‐2637, 1983) shows that STRIDE and DSSP assign secondary structural states in 58 and 31% of 226 protein chains in our data sample, respectively, in greater agreement with the specific residue‐by‐residue definitions provided by the discoverers of the structures while in 11% of the chains, the assignments are the same. STRIDE delineates every 11th helix and every 32nd strand more in accord with published assignments. © 1995 Wiley‐Liss, Inc.
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Cites
Kabsch, W., & Sander, C. (1983) · Biopolymers · doi:10.1002/bip.360221211 · Cited by 15,320
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
Matthews, B. W. (1975) · Biochimica et Biophysica Acta (BBA) - Protein Structure · doi:10.1016/0005-2795(75)90109-9 · Cited by 5,399
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How significant is a protein structure similarity with TM-score = 0.5?
Xu, J., & Zhang, Y. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq066 · Cited by 1,142
STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins
Heinig, M., & Frishman, D. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh429 · Cited by 1,003
Self-citationCan correct protein models be identified?
Wallner, B., & Elofsson, A. (2003) · Protein Science · doi:10.1110/ps.0236803 · Cited by 710
Modeling the language of life – Deep Learning Protein Sequences
Heinzinger, M., Elnaggar, A., Wang, Y., Dallago, C., Nechaev, D., Matthes, F., & Rost, B. (2019) · doi:10.1101/614313 · Cited by 606
Metadata
- Authors
- Frishman, D., & Argos, P.
- Venue
- Proteins: Structure, Function, and Bioinformatics
- Publisher
- Wiley
- Published
- 1995-12
- Volume
- 23
- Issue
- 4
- Pages
- 566-579
- ISSN
- 0887-3585 (ISSN-L)
- 1097-0134
- OpenAlex
- W2141920771
- Cited by
- 2,523
- References
- 2
- FWCI
- 4.86
- Type
- journal article
- Language
- en
- Open access
- closed
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- Frishman, D., & Argos, P. (1995). Knowledge‐based protein secondary structure assignment. Proteins: Structure, Function, and Bioinformatics. https://doi.org/10.1002/prot.340230412
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