Characteristics of UV-induced Mutation Spectra in Human XP-D/ERCC2 Gene-mutated Xeroderma Pigmentosum and Trichothiodystrophy Cells
Abstract
To study the relationships between mutagenesis and carcinogenesis, we compared the mutations and their frequency induced by ultraviolet irradiation at 254 nm (UV-C) in XP-D (GM-08207B/XP6BE), TTD/XP-D (TTD1VI-LAS-KMT11) and wild-type (MRC-5V1) human cells. XP-D and TTD/XP-D cells, mutated in the same XP-D/ERCC2 gene, are deficient in nucleotide excision repair. Whereas XP-D patients develop early skin tumors, TTD patients do not exhibit abnormal levels of cancers. After verification of UV hypersensitivity and DNA repair defect of the immortalized cell lines XP-D and TTD compared with a wild-type cell line, UV-induced mutagenesis was studied with a new shuttle vector pR2, carrying the target lacZ' gene. The UV-mutation frequencies in XP-D and TTD cells were similar and significantly increased compared with normal cells. Sequence analysis of 312 independent mutant plasmids revealed that more rearrangements were induced in TTD cells (16%) than in XP-D (5%) and normal cells (1%), while XP-D cells exhibited a twofold higher rate of tandem mutations compared with TTD and normal cells. In the three cell lines, a predominance of G:C to A:T transitions was found, especially in chiefly on the cytosine at 5'-TC-3' sites. The types of UV-induced point mutations in TTD cells were, however, more similar to those in normal cells than those found in XP-D cells. XP-D mutations were preferentially located in 5'-TCPur-3' sites, while mutations in normal and TTD cells were mostly at 5'-TCC-3' sites. Analysis of mutation spectra revealed differences in the location of the mutational hotspots between the three lines. Although the mutation frequency of the UV-irradiated pR2 vector is much higher in TTD and XP-D cells than in normal cells, the mutation spectrum is closer between TTD and normal cells as compared with XP-D cells. These dissimilarities could contribute to an explanation of some of the differences between the two syndromes.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
TCC to T dominated the mutational spectra of single genes isolated from UV-irradiated cell cultures.
“In the mid-1990s, Drobetsky et al. (29) and Marionnet et al. (30) observed that TCC → T dominated the mutational spectra of single genes isolated from UV-irradiated cell cultures.”
From Evidence for recent, population-specific evolution of the human mutation rate (2015) · cites this paper as [30]
Cited by
Sorted by citations
Nucleotide excision repair and human syndromes
de Boer, J., & Hoeijmakers, J. H. J. (2000) · Carcinogenesis · doi:10.1093/carcin/21.3.453 · Cited by 674 · see citing works
Genomic analysis identifies new drivers and progression pathways in skin basal cell carcinoma
Bonilla, X., Parmentier, L., King, B., Bezrukov, F., Kaya, G., Zoete, V., Seplyarskiy, V. B., Sharpe, H. J., McKee, T., Letourneau, A., et al. (2016) · Nature Genetics · doi:10.1038/ng.3525 · Cited by 486 · see citing works
“5 cm between the tumors) that were T3 (24) Ear T2 (25) Ear VS037 T7 (24) Leg T6 (9) Leg”
BackgroundTrichothiodystrophy: Update on the sulfur-deficient brittle hair syndromes
Itin, P. H., Sarasin, A. R., & Pittelkow, M. R. (2001) · Journal of the American Academy of Dermatology · doi:10.1067/mjd.2001.114294 · Cited by 292 · see citing works
Self-citation3 Xeroderma pigmentosum and related disorders: Defects in DNA repair and transcription
Berneburgl, M., & Lehmann, A. R. (2001) · Advances in genetics · doi:10.1016/s0065-2660(01)43004-5 · Cited by 200 · see citing works
Evidence for recent, population-specific evolution of the human mutation rate
Harris, K. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1418652112 · Cited by 165 · see citing works
“(30) observed that TCC→T dominated the mutational spectra of single genes isolated from UV-irradiated cell cultures.”
BackgroundRole of DNA Polymerase η in the UV Mutation Spectrum in Human Cells
Stary, A., Kannouche, P. L., Lehmann, A. R., & Sarasin, A. R. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m211838200 · Cited by 127 · see citing works
Self-citationRobert, C., Muel, B., Benoit, A., Dubertret, L., Sarasin, A. R., & Stary, A. (1996) · Journal of Investigative Dermatology · doi:10.1111/1523-1747.ep12345616 · Cited by 115 · see citing works
Self-citationTrichothiodystrophy, a transcription syndrome
Bergmann, E., & Egly, J. (2001) · Trends in Genetics · doi:10.1016/s0168-9525(01)02280-6 · Cited by 105 · see citing works
Ocular Manifestations in the Inherited DNA Repair Disorders
Dollfus, H., Porto, F. B. O., Caussade, P., Speeg‐Schatz, C., Sahel, J., Grosshans, E., Flament, J., & Sarasin, A. R. (2003) · Survey of Ophthalmology · doi:10.1016/s0039-6257(02)00400-9 · Cited by 102 · see citing works
Self-citationRole of DNA polymerases η, ι and ζ in UV resistance and UV-induced mutagenesis in a human cell line
Guéranger, Q., Stary, A., Aoufouchi, S., Faili, A., Sarasin, A. R., Reynaud, C., & Weill, J. (2008) · DNA repair · doi:10.1016/j.dnarep.2008.05.012 · Cited by 95 · see citing works
“7 The SV40-based shuttle vector pR2 carries the 289 bp bacterial lacZ' gene and promoter as mutagenesis target, the kanamycin resistance gene, and the SV40 and bacterial replication origins [22].”
BackgroundSelf-citationThe genetics of the hereditary xeroderma pigmentosum syndrome
Stary, A., & Sarasin, A. R. (2002) · Biochimie · doi:10.1016/s0300-9084(01)01358-x · Cited by 91 · see citing works
Self-citationThe Involvement of DNA-Damage and -Repair Defects in Neurological Dysfunction
Kulkarni, A., & Wilson, D. M. (2008) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2008.01.009 · Cited by 87 · see citing works
“The severity of these phenotypes varies with the location of the mutation and the gene affected.(220,221) Within the photosensitive category, three complementation groups, XPD, XPB, and TTD-A, have been reported; 95% of the reported cases belong to the XPD group.”
BackgroundUnraveling DNA Repair in Human: Molecular Mechanisms and Consequences of Repair Defect
Tuteja, N. K., & Tuteja, R. (2001) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.1080/20014091074192 · Cited by 79 · see citing works
“It was observed that although the mutation frequency of the UV-irradiated pR2 vector was much higher in TTD and XP-D cells than in normal cells, the mutation spectrum is closer between TTD and normal cells when compared with XP-D cells (Madzak et al., 1993; Marionnet et al., 1995).”
BackgroundResultBoyle, J., Ueda, T., Oh, K., Imoto, K., Tamura, D., Jagdeo, J. R., Khan, S. G., Nadem, C., DiGiovanna, J. J., & Kraemer, K. H. (2008) · Human Mutation · doi:10.1002/humu.20768 · Cited by 71 · see citing works
“However, the UV-induced plasmid mutation frequency was similarly elevated in XP and TTD cells [Marionnet et al., 1995].”
Backgroundde Boer, J., STEEG, H. V., Berg, R. J. W., Garssen, J., de Wit, J., van Oostrum, C. T., Beems, R. B., van der Horst, G. T. J., van Kreijl, C. F., de Gruijl, F. R., et al. (1999) · PubMed · Cited by 69 · see citing works
Ahrens, C., Grewe, M., Berneburg, M., Grether‐Beck, S., Quilliet, X., Mezzina, M., Sarasin, A. R., Lehmann, A. R., Arlett, C. F., & Krutmann, J. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.13.6837 · Cited by 63 · see citing works
Self-citationDeleterious effects of ultraviolet A radiation in human cells
Stary, A., Robert, C., & Sarasin, A. R. (1997) · Mutation Research/DNA Repair · doi:10.1016/s0921-8777(96)00041-9 · Cited by 62 · see citing works
Self-citationThe cancer-free phenotype in trichothiodystrophy is unrelated to its repair defect.
Berneburg, M., Clingen, P. H., Harcourt, S. A., Lowe, J. E., Taylor, E. M., Green, M. H. L., Krutmann, J., Arlett, C. F., & Lehmann, A. R. (2000) · PubMed · Cited by 41 · see citing works
Mutation Spectra Resulting from Carcinogenic Exposure: From Model Systems to Cancer-Related Genes
Eugenia Dogliotti, Y., Hainaut, P. L., Hernandez‐Boussard, T., D’Errico, M., & DeMarini, D. M. (1998) · Recent results in cancer research/Recent Results in Cancer Research · doi:10.1007/978-3-642-46870-4_6 · Cited by 30 · see citing works
Mutagenic fingerprint of ozone in human cells
Jorge, S. (2002) · DNA repair · doi:10.1016/s1568-7864(02)00011-3 · Cited by 20 · see citing works
Chiganças, V., Lima-Bessa, K. M., Stary, A., Menck, C. F. M., & Sarasin, A. R. (2008) · Cancer Research · doi:10.1158/0008-5472.can-07-6695 · Cited by 19 · see citing works
“(XPD mutated), and SV40-TTD1VI, were from our laboratory (26, 27).”
BackgroundSelf-citationRaslová, H., Mistríková, J., Kúdelová, M., et al. (2000) · Viral Immunology · doi:10.1089/08828240050144644 · Cited by 19 · see citing works
“Analysis of DNA synthesis in lymphocytes from MHV-72 infected nude mice blood was carried out by the unscheduled DNA synthesis (UDS) method as described elsewhere (13).”
Self-citationZhou, N. Y., Bates, S., Bouziane, M., Stary, A., Sarasin, A. R., & O'Connor, T. R. (2003) · Journal of Molecular Biology · doi:10.1016/s0022-2836(03)00793-9 · Cited by 15 · see citing works
Self-citationZeng, L., Sarasin, A. R., & Mezzina, M. (1998) · Cell Biology and Toxicology · doi:10.1023/a:1007477820594 · Cited by 15 · see citing works
“UV-induced photoproducts (cyclobutane pyrimidine dimers and [6-4]-pyrimidine pyrimidone) have been shown to be mutagenic in shuttle vectors replicating in XP cells (Bredberg et al., 1986; Marionnet et al., 1995).”
BackgroundSelf-citationNishiwaki, T., Kobayashi, N., Iwamoto, T., Yamamoto, A., Sugiura, S., Liu, Y., Sarasin, A. R., Okahashi, Y., Hirano, M., Ueno, S., et al. (2008) · DNA repair · doi:10.1016/j.dnarep.2008.08.009 · Cited by 15 · see citing works
Self-citationSingle nucleotide instability: a wide involvement in human and rat mammary carcinogenesis?
Okochi, E., Watanabe, N., Sügimura, T., et al. (2002) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/s0027-5107(02)00156-2 · Cited by 13 · see citing works
Milligan, W. R., Amster, G., & Sella, G. (2022) · Genetics · doi:10.1093/genetics/iyac087 · Cited by 8 · see citing works
Okochi, E., Ichimura, S., Sügimura, T., et al. (2002) · Japanese Journal of Cancer Research · doi:10.1111/j.1349-7006.2002.tb01284.x · Cited by 10 · see citing works
ERCC-3 (excision repair cross-complementing rodent repair deficiency, complementation group 3)
Stary, A., & Sarasin, A. R. (2011) · Atlas of Genetics and Cytogenetics in Oncology and Haematology · doi:10.4267/2042/37723 · Cited by 3 · see citing works
Self-citationRecent evolution of the mutation rate and spectrum in EuropeansPreprint
Harris, K. (2014) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/010314
Medical Background: Human DNA Damage Recognition and Processing Disorders
Naegeli, H. (1997) · Molecular biology intelligence unit · doi:10.1007/978-1-4684-6468-9_1
- Authors
- Marionnet, C., Benoit, A., Benhamou, S., Sarasin, A., & Stary, A.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Corresponding author
- Sarasin, Alain
- Venue
- Journal of Molecular Biology
- Publisher
- Elsevier BV
- Published
- 1995-10
- Volume
- 252
- Issue
- 5
- Pages
- 550-562
- ISSN
- 0022-2836 (ISSN-L)
- OpenAlex
- W1989931721
- Cited by
- 31
- References
- 0
- Citations by year
- 2022: 1 · 2016: 1 · 2015: 1 · 2014: 1
- FWCI
- 0.74
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Journal of Molecular Biology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Ligue Contre le Cancer
- Centre National de la Recherche Scientifique
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Carcinogens and Genotoxicity Assessment
- Health Sciences › Medicine › Pathology and Forensic Medicine › Genetic factors in colorectal cancer
- Keywords
- xeroderma pigmentosum, trichothiodystrophy, UV mutagenesis, mutation spectrum, nucleotide excision repair deficiency, UV hypersensitivity, mutational hotspots, G:C to A:T transitions, carcinogenesis, DNA repair
- MeSH terms
- Amino Acid Sequence, Base Sequence, Cell Line, Cell Line, Transformed, Cell Survival, DNA Repair, Fibroblasts, Genetic Vectors, Hair Diseases, Humans, Lac Operon, Molecular Sequence Data, Mutation, Ultraviolet Rays, Xeroderma Pigmentosum, Mutagenesis, Point Mutation
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review