SOCKET: a program for identifying and analysing coiled-coil motifs within protein structures11Edited by J. Thornton

Cited by (358)

Items 301–358 of 358

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4. Molecular and structural analysis of a mechanical transition of helices in the L. donovani coronin coiled-coil domain
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5. Structural characterization of the self‐association domain of swallow
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6. Computational assessment of folding energy landscapes in heterodimeric coiled coils
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7. Stabilizing and Understanding a Miniprotein by Rational Redesign
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8. Foldamers
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9. Coiled-coils as emerging drivers of liquid–liquid phase separation
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10. Enumeration and comprehensive in-silico modeling of three-helix bundle structures composed of typical αα-hairpins
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11. Bioinformatics Analysis of the Periodicity in Proteins with Coiled-Coil Structure—Enumerating All Decompositions of Sequence Periods
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12. Structure of the UspA1 protein fragment from Moraxella catarrhalis responsible for C3d binding
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13. Influence of the hydrophobic face width on the degree of association of coiled–coil proteins
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14. Accommodating Discontinuities in Dimeric Left-Handed Coiled Coils in ATP Synthase External Stalks
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15. Ca2+-Responsive Glyco-insulin
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16. Molecular Mechanism of STIL Coiled-Coil Domain Oligomerization
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17. Structural Modeling and Dynamics of the Full‐Length Homer1 Multimer
    Zsófia E. Kálmán, András Czajlik, Brigitta Maruzs, Fanni Farkas, István Pap, Csilla Homonnay, Tomáš Klumpler, Gyula Batta, Zoltán Gáspári, Bálint Ferenc Péterfia · 2025 · Proteins Structure Function and Bioinformatics
18. Improving Coiled-Coil Prediction with Evolutionary Information
    Piero Fariselli, Lisa Bartoli, Rita Casadio · 2010 · Lecture notes in computer science
19. Ein mithilfe synthetischer GCN4‐Leucinzipperarrays aufgedecktes Coiled‐Coil‐Assoziationsnetzwerk
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20. ARCIMBOLDO at low resolution: Verification for coiled coils and globular proteins
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21. Recent Advances in Computational Prediction of Secondary and Supersecondary Structures from Protein Sequences
    Jian Zhang, Jingjing Qian, Quan Zou, Feng Zhou, Lukasz Kurgan · 2024 · Methods in molecular biology
22. Evaluation of Structure-Property Relationships within Insect Cuticle to Identify Motifs for Biomaterial Design
    Patricia A. Sprouse · 2014 · KU ScholarWorks (The University of Kansas)
23. COCONUT: An analysis of coiled-coil regions in proteins
    Neelesh Soni, Mallur Srivatsan Madhusudhan · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
24. CoCoNat: A Deep Learning–Based Tool for the Prediction of Coiled-coil Domains in Protein Sequences
    Matteo Manfredi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio · 2024 · BIO-PROTOCOL
25. Use of Thiol-Disulfide Exchange Method to Study Transmembrane Peptide Association in Membrane Environments
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26. Computational study of the vibrational characteristics of alpha-helical coiled coils according to structural changes
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27. Ca2+-Sensor Neurocalcin δ and Hormone ANF Modulate ANF-RGC Activity by Diverse Pathways: Role of the Signaling Helix Domain
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28. Structural Analysis of Par-4 and Crystallographic Analysis of the Regulatory Domain
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29. Backbone Degradable and Coiled‐Coil Based Macromolecular Therapeutics
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30. Investigation of coiled-coil interactions between proteins of the spindle pole body
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31. Protein function prediction in genomes: Critical assessment of coiled-coil predictions based on protein structure data
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32. Structural modelling and dynamics of the full-length Homer1 multimer
    Zsófia E. Kálmán, András Czajlik, Brigitta Maruzs, Fanni Farkas, István Pap, Csilla Homonnay, Tomáš Klumpler, Gyula Batta, Zoltán Gáspári, Bálint Ferenc Péterfia · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
33. SVM Classification to Predict Two Stranded Anti-parallel Coiled Coils based on Protein Sequence Data
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34. Monte Carlo studies of the mechanical properties of biopolymers
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35. FiberID—A technique to identify fibrous protein subclasses
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36. Anti-parallel Coiled Coils Structure Prediction by Support Vector Machine Classification
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37. Computational methods for the analysis of protein structure and function
    Lisa Bartoli · 2009 · AMS Dottorato Institutional Doctoral Theses Repository (University of Bologna)
38. The Moraxella adhesin UspA1 binds to its human CEACAM1 receptor by a deformable trimeric coiled-coil This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits distribution, and reproduction in any medium, provided the original author and source are credited. This license does not permit commercial exploitation or the creation of derivative works without specific permission.
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39. Multicoil-HMM : improved prediction of coiled-coil oligomer state from sequence
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40. Energetic basis of coiled coil topology and oligomeric state specificity
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41. Structure - functional relationships of Right handed coiled-coil (RHCC) from the Archaea, Staphylothermus marinus
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42. Peptide Engineering Strategies
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43. Crystal and solution structures of a novel antimicrobial peptide fromChrysomya megacephala
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44. Constructing synthetic-protein assemblies from de novo designed 3 10 helices
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45. α-Helical Coiled Coils
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46. Comparative Simulative Analysis and Design of Single-Chain Self-Assembled Protein Cages
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47. Additional file 1 of Enumeration and comprehensive in-silico modeling of three-helix bundle structures composed of typical αα-hairpins
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48. Folding and Assembly of Multimeric Proteins: Dimeric HIV-1 Protease and a Trimeric Coiled Coil Component of a Complex Hemoglobin Scaffold: A Dissertation
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49. Sequence Prediction, Structural Modelling and the Challenges of Plasticity in Coiled Coils
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50. Designability of α-Helical Protein Filaments
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51. Structural basis for repurposing a flexible phage tail into an Intraspecific bacterial competition weapon
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52. Etudes biochimiques et biophysiques des protéines de la machinerie réplicative des paramyxovirus
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53. Characterization of the intrinsically disordered and multimerization regions of the Henipavirus P proteins
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54. Foldamères stabilisateurs d’hélices peptidiques : Applications à l’inhibition d’interactions protéine-protéine.
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55. Hydrogel de nanocapsules lipidiques combinées au peptide de ciblage NFL-TBS.40-63 pour la prévention de récurrences de glioblastome
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56. Expanding all-α-helical protein space through rational computational design
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