The DOI matches its Crossref record; 6 of the 6 references it cites were found in a registry or an index.
Protein Structure Modeling with MODELLER
Abstract
Genome sequencing projects have resulted in a rapid increase in the number of known protein sequences. In contrast, only about one-hundredth of these sequences have been characterized using experimental structure determination methods. Computational protein structure modeling techniques have the potential to bridge this sequence-structure gap. This chapter presents an example that illustrates the use of MODELLER to construct a comparative model for a protein with unknown structure. Automation of similar protocols (correction of protcols) has resulted in models of useful accuracy for domains in more than half of all known protein sequences.
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Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Needleman, S. B., & Wunsch, C. D. (1970) · Journal of Molecular Biology · doi:10.1016/0022-2836(70)90057-4 · Cited by 11,288
Comparative Protein Structure Modeling of Genes and Genomes
Martí-Renom, M. A., Stuart, A. C., Fiser, A., Sánchez, R., Melo, F., & Šali, A. (2000) · Annual Review of Biophysics and Biomolecular Structure · doi:10.1146/annurev.biophys.29.1.291 · Cited by 3,169
Self-citationThe relation between the divergence of sequence and structure in proteins.
Chothia, C., & Lesk, A. M. (1986) · The EMBO Journal · doi:10.1002/j.1460-2075.1986.tb04288.x · Cited by 2,458
Comparative modeling for protein structure prediction
Ginalski, K. (2006) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2006.02.003 · Cited by 296
Srinivasan, N., & Blundell, T. L. (1993) · "Protein Engineering, Design and Selection" · doi:10.1093/protein/6.5.501 · Cited by 119
Cited by
Khalifa, A. A. Z., Ichikawa, M., Dai, D., Kubo, S., Black, C. S., Peri, K., McAlear, T. S., Veyron, S., Yang, S. K., Vargas, J., et al. (2020) · eLife · doi:10.7554/elife.52760 · Cited by 1,676
Genetic Analysis of Human Norovirus Strains in Japan in 2016–2017
Nagasawa, K., Matsushima, Y., Motoya, T., Mizukoshi, F., Ueki, Y., Sakon, N., Murakami, K., Shimizu, T., Okabe, N., Nagata, N., et al. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00001 · Cited by 1,257
Lysine glutarylation is a protein posttranslational modification regulated by SIRT5
Tan, M., Peng, C., Anderson, K. A., Chhoy, P., Xie, Z., Dai, L., Park, J., Chen, Y., Huang, H., Zhang, Y., et al. (2014) · Cell Metabolism · doi:10.1016/j.cmet.2014.03.014 · Cited by 844
Advances in protein structure prediction and design
Kuhlman, B., & Bradley, P. (2019) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-019-0163-x · Cited by 806
NMRbox: A Resource for Biomolecular NMR Computation
Maciejewski, M. W., Schuyler, A. D., Gryk, M. R., Moraru, I. I., Romero, P. R., Ulrich, E. L., Eghbalnia, H. R., Livny, M., Delaglio, F., & Hoch, J. C. (2017) · Biophysical Journal · doi:10.1016/j.bpj.2017.03.011 · Cited by 518
Metadata
- Authors
- Eswar, N., Eramian, D., Webb, B., Shen, M.-Y., & Sali, A.
- Venue
- Methods in Molecular Biology
- Publisher
- Humana Press
- Published
- 2008
- Volume
- 426
- Pages
- 145-159
- ISSN
- 1064-3745 (ISSN-L)
- 1940-6029
- OpenAlex
- W95014119
- Cited by
- 1,773
- References
- 6
- FWCI
- 79.71
- Type
- book chapter
- Language
- en
- Open access
- closed
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- Eswar, N., Eramian, D., Webb, B., Shen, M.-Y., & Sali, A. (2008). Protein Structure Modeling with MODELLER. Methods in Molecular Biology. https://doi.org/10.1007/978-1-60327-058-8_8
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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