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Quantitative Analysis of Protein-RNA Interactions by Gel Mobility Shift
Open accessAbstract
The gel mobility shift assay is routinely used to visualize protein-RNA interactions. Its power resides in the ability to resolve free from bound RNA with high resolution in a gel matrix. We review the quantitative application of this approach to elucidate thermodynamic properties of protein-RNA complexes. Assay designs for titration, competition, and stoichiometry experiments are presented for two unrelated model complexes.
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Cites
An Algorithm for Least-Squares Estimation of Nonlinear Parameters
Marquardt, D. W. (1963) · Journal of the Society for Industrial and Applied Mathematics · doi:10.1137/0111030 · Cited by 30,728
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Jarmoskaite, I., AlSadhan, I., Vaidyanathan, P. P., & Herschlag, D. (2020) · eLife · doi:10.7554/elife.57264 · Cited by 522
Roquin Promotes Constitutive mRNA Decay via a Conserved Class of Stem-Loop Recognition Motifs
Leppek, K., Schott, J., Reitter, S., Poetz, F., Hammond, M. C., & Stoecklin, G. (2013) · Cell · doi:10.1016/j.cell.2013.04.016 · Cited by 320
Pervasive Regulatory Functions of mRNA Structure Revealed by High-Resolution SHAPE Probing
Mustoe, A. M., Busan, S., Rice, G. M., Hajdin, C. E., Peterson, B. K., Ruda, V. M., Kubica, N., Nutiu, R., Baryza, J. L., & Weeks, K. M. (2018) · Cell · doi:10.1016/j.cell.2018.02.034 · Cited by 258
Goforth, J. B., Anderson, S. A., Nizzi, C. P., & Eisenstein, R. S. (2010) · RNA · doi:10.1261/rna.1857210 · Cited by 71
Molecular paleontology: a biochemical model of the ancestral ribosome
Hsiao, C., Lenz, T. K., Peters, J. K., Fang, P.-Y., Schneider, D. M., Anderson, E. J., Preeprem, T., Bowman, J. C., O'Neill, E. B., Lie, L., et al. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt023 · Cited by 45
Metadata
- Authors
- Ryder, S. P., Recht, M. I., & Williamson, J. R.
- Venue
- Methods in Molecular Biology
- Publisher
- Humana Press
- Published
- 2008
- Volume
- 488
- Pages
- 99-115
- ISSN
- 1064-3745 (ISSN-L)
- 1940-6029
- OpenAlex
- W2119137031
- Cited by
- 178
- References
- 1
- FWCI
- 7.88
- Type
- book chapter
- Language
- en
- Open access
- green
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- Ryder, S. P., Recht, M. I., & Williamson, J. R. (2008). Quantitative Analysis of Protein-RNA Interactions by Gel Mobility Shift. Methods in Molecular Biology. https://doi.org/10.1007/978-1-60327-475-3_7
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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