Cloning and analysis of gene regulation of a novel LPS-inducible cDNA
Abstract
The expression of many genes is altered upon the activation of macrophages by bacterial LPS. These genes play a crucial role in the orchestration of various responses to protect the host against infection. A novel 2.3 kilobase (kb) cDNA, designated IRG1, was obtained from a cDNA library prepared with RNA isolated from RAW 264.7 following lipopolysaccharide stimulation. Sequence analysis of the clone revealed no identity to any known genes but showed the presence of many potential phosphorylation sites suggesting that IRG1 protein product may be regulated at this level. Furthermore, IRG1 contains the motif for glycosaminoglycan attachment site, implying that IRG1 may be a proteoglycan. By interspecific back-cross analysis, Irg1 was mapped to mouse chromosome 14 linked to Tyrp2 and Rap2a. The IRG1 message appears 1.5 h following LPS exposure and its induction was not dependent on new protein synthesis. In fact, cycloheximide induced the expression of IRG1, suggesting that a protein repressor prevents the expression of IRG1 when uninduced. The role of the protein kinase A pathway in regulating the induction of IRG1 by LPS is questionable, because although forskolin inhibited its induction, neither dibutyrl-cAMP nor 8-(4-chlorophenylthio)-cAMP had much effect on its expression. In contrast, activation of protein kinase C potentiated the LPS response. Chelation of extracellular calcium inhibited IRG1 4 h after LPS induction, while increasing intracellular calcium had little effect on the levels of the IRG1 transcript. Inhibiting tyrosine phosphorylation abrogated the induction of IRG1 by LPS. Hence, the induction of IRG1 by LPS is mediated by tyrosine kinase and protein kinase C pathway.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Itaconate is an important immunomodulatory metabolite that negatively regulates the inflammatory response and cytokine production.
“Since 2016, several key studies have uncovered a role for itaconate as a crucial anti-inflammatory metabolite that negatively regulates the inflammatory response and cytokine production50,59–61, as shown in Figure 3.”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
1EI can inhibit IκBξ.
“1EI (an activated Michael acceptor) could also inhibit IκBξ”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
The selective inhibition of IL-6 by DI is mediated through inhibition of IκBξ.
“an effect shown to be mediated through inhibition of IκBξ the major transcription factor governing secondary transcriptional responses to TLR activation60.”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
DI induces electrophilic stress and Nrf2 in macrophages via depletion of intracellular GSH to form a DI-GSH adduct.
“Bambouskova and colleagues (2018) demonstrated that DI could induce electrophilic stress and Nrf2 in macrophages via depletion of intracellular GSH to form a DI-GSH adduct”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
No differences in IκBξ levels are observed between Irg1-/- and wildtype macrophages stimulated with LPS.
“no differences were observed in IκBξ levels between Irg1-/- and wildtype macrophages stimulated with LPS60.”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
4EI cannot inhibit IκBξ unless GSH synthesis is inhibited by BSO.
“4EI (which has similar reactivity to endogenous itaconate) could not inhibit IκBξ unless GSH synthesis was inhibited by buthionine sulfoximine (BSO)60.”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
LPS-induced Nrf2 stabilisation is decreased in Irg1-deficient BMDMs.
“Bambouskova and colleagues (2018) who demonstrated a decrease in LPS-induced Nrf2 stabilisation in Irg1-deficient BMDMs”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
Inhibition of IκBξ by DI is mediated by activation of ATF3 and occurs at the level of Nfkbiz translation, as assessed by eIF2α phosphorylation, in a Nrf2-independent manner.
“inhibition of IκBξ by DI was shown to be mediated by activation of the transcription factor ATF3 and occur at the level of Nfkbiz translation, as assessed by eIF2α phosphorylation, in a Nrf2-independent manner60.”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
DI selectively inhibits LPS-induced IL-6 while TNF-α levels remain unaffected.
“DI is reported to selectively inhibit LPS-induced IL-6 while TNF-α levels remain unaffected”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
Endogenous itaconate stabilizes Nrf2.
“confirming that endogenous itaconate stabilizes Nrf260.”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
High levels of succinate or 2-HG inhibit α-KGDDs, including PHDs, TET DNA demethylases, and JMJDs.
“High levels of succinate or 2-HG inhibit α-KGDDs. These include the PHDs, the TET DNA demethylases, and the JMJDs154-156”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
In vivo administration of DI ameliorates skin pathology in a mouse model of psoriasis.
“The therapeutic potential of DI was also demonstrated as in vivo administration of DI resulted in an amelioration of skin pathology in a mouse model of psoriasis, a disease also currently treated by the related electrophile DMF60,65.”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
Itaconate primarily acts as a protective, anti-inflammatory metabolite.
“The generation of itaconate from the Krebs Cycle intermediate cis-aconitate contrasts with most other metabolite signals emanating from mitochondria, in that it primarily acts as a protective, anti-inflammatory metabolite55,59,60.”
From Coupling Krebs cycle metabolites to signalling in immunity and cancer (2018) · cites this paper as [60]
The citation lists haven’t been fetched yet
References 76 · Cited by 165
- Authors
- Lee, C. L., Jenkins, N., Gilbert, D., Copeland, N., & O'Brien, W.
- Affiliations
- Frederick National Laboratory for Cancer Research (US)
- Baylor College of Medicine (US)
- Venue
- Immunogenetics
- Published
- 1995-03
- Volume
- 41
- Issue
- 5
- Pages
- 263-70
- ISSN
- 0093-7711 (ISSN-L)
- 1432-1211
- OpenAlex
- W2011103030
- Cited by
- 165
- References
- 76
- Citations by year
- 2026: 10 · 2025: 18 · 2024: 36 · 2023: 9 · 2022: 18 · 2021: 11 · 2020: 8 · 2019: 6 · 2018: 4 · 2017: 3 · 2016: 4 · 2015: 3 · 2014: 3 · 2013: 2 · 2012: 2
- FWCI
- 0.43
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Immunogenetics (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Keywords
- IRG1, lipopolysaccharide stimulation, RAW 264.7 macrophages, proteoglycans, phosphorylation sites, protein kinase C, tyrosine kinase, calcium signaling, protein kinase A, transcriptional repression, cDNA cloning, mouse chromosome 14
- MeSH terms
- Amino Acid Sequence, Animals, Base Sequence, Chromosome Mapping, Cloning, Molecular, Female, Glucocorticoids, Lipopolysaccharides, Male, Mice, Inbred C57BL, Molecular Sequence Data, Phosphorylation, Protein Kinase C, RNA, Messenger, Protein Biosynthesis, Tyrosine, DNA, Complementary, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review