The Rooting of the Universal Tree of Life Is Not Reliable

Cited by (267)

Items 201–267 of 267

1. Integrative Perspectives: In Quest of a Coherent Framework for Origins of Life on Earth
   Richard Egel · 2011 · Springer eBooks
2. Horizontal gene transfer, gene histories, and the root of the tree of life
   Olga Zhaxybayeva, Johann Peter Gogarten · 2007 · Cambridge University Press eBooks
3. Can Identification of a Fourth Domain of Life Be Made from Sequence Data Alone, and Could It Be Done on Mars?
   Anthony M. Poole, Eske Willerslev · 2007 · Astrobiology
4. The Universal Tree of Life and the Last Universal Cellular Ancestor: Revolution and Counterrevolutions
   Patrick Forterre · 2010 · Wiley eBooks
5. Protein structures unravel the signatures and patterns of deep time evolution
   Ajith Harish · 2024 · QRB Discovery
6. Cenancestor, the Last Universal Common Ancestor
   Luis Delaye, Arturo Becerra · 2012 · Evolution Education and Outreach
7. Mitochondria and the Origin of Eukaryotes
   Bernd Franz Lang · 2013 · Springer eBooks
8. Romance of the three domains: how cladistics transformed the classification of cellular organisms
   Chi-Chun Ho, Susanna K. P. Lau, Patrick C. Y. Woo · 2013 · Protein & Cell
9. Prebiotic Chemistry — Biochemistry — Emergence of Life (4.4-2 Ga)
   Robert Pascal, Laurent Boiteau, Patrick Forterre, Muriel Gargaud, Antonio Lazcano, Purificación López‐García, David Moreira, Marie‐Christine Maurel, Juli G. Peretó, Daniël Prieur et al. · 2007 · Springer eBooks
10. Inferring Optimal Species Trees in the Presence of Gene Duplication and Loss: Beyond Rooted Gene Trees
    Md. Shamsuzzoha Bayzid · 2022 · Journal of Computational Biology
11. Phylogenomics of Afrotherian mammals and improved resolution of extant Paenungulata
    Gaoming Liu, Qi Pan, Yichen Dai, Xiao Wang, Meng Li, Pingfen Zhu, Xuming Zhou · 2024 · Molecular Phylogenetics and Evolution
12. The Universal Tree of Life: From Simple to Complex or From Complex to Simple
    Henner Brinkmann, Hervé Philippe · 2005 · Advances in astrobiology and biogeophysics
13. Horizontal Gene Transfer and the Universal Tree of Life
    James R. Brown, Michael J. Italia, Christophe J. Douady, Michael J. Stanhope · 2002 · Elsevier eBooks
14. Molecular phylogenetic analysis of the Amiota taurusata species group within the Chinese species, with descriptions of two new species
    Zhen-fang Shao, Tong Li, Jianjun Jiang, Jinming Lu, Hongwei Chen · 2014 · Journal of Insect Science
15. Genomic Analyses and the Origin of the Eukaryotes
    Maria C. Rivera · 2007 · Chemistry & Biodiversity
16. When the Past Fades: Detecting Phylogenetic Signal with SatuTe
    Cassius Manuel, Enes Sakalli, Heiko A. Schmidt, Carme Viñas, Arndt von Haeseler, Christiane Elgert · 2025 · Molecular Biology and Evolution
17. Universal paralogs provide a window into evolution before the last universal common ancestor
    Aaron David Goldman, Gregory P. Fournier, Betül Kaçar · 2026 · Cell Genomics
18. Search for a Methanopyrus-proximal last universal common ancestor based on comparative-genomic analysis
    Zhiliang Yu, Shanxiang Xu · 2010 · Annals of Microbiology
19. The Indeterminacy Bottleneck: Implications for Habitable Worlds
    Ian von Hegner · 2021 · Acta Biotheoretica
20. Molecular Phylogenetic Analysis of theAmiota taurusataSpecies Group within the Chinese Species, with Descriptions of Two New Species
    Zhen-fang Shao, Tong Li, Jianjun Jiang, Jinming Lu, Hongwei Chen · 2014 · Journal of Insect Science
21. Acytota – associated kingdom of neglected life
    Edward N. Trifonov, Eduard Kejnovský · 2015 · Journal of Biomolecular Structure and Dynamics
22. The Last Common Ancestor of Modern Cells
    David Moreira, Purificación López‐García · 2007 · Springer eBooks
23. Sistemática e filosofia: filogenia do complexo Ocotea e revisão do grupo Ocotea indecora (Lauraceae)
    Leandro Cézanne de Souza Assis · 2009
24. Influence of long-branch bias on phylogenetic analysis
    Tomoaki Watanabe, Shohei Nakata, Tokumasa Horiike · 2025 · Genes & Genetic Systems
25. Molecular Systematics and Evolution of Arthropods
    Marjorie A. Hoy · 2003 · Elsevier eBooks
26. Molecular Studies on Head Development of the Amphipod Crustacean Parhyale hawaiensis
    Bernhard G. M. Schmid · 2011
27. Who is the last universal common ancestor? A brief discussion about its genetics, cellular properties, and metabolisms
    Juanjuan Xie, Fengping Wang · 2017 · Chinese Science Bulletin (Chinese Version)
28. A Hitchhiker's Guide to Evolving Networks
    C. G. Kurland, Otto G. Berg · 2010
29. A Fundamentally New Perspective on the Origin and Evolution of Life
    Shi V. Liu · 2008 · arXiv (Cornell University)
30. Branching orders among α-proteobacteria and mitochondria inferred from gene transpositions
    Takashi Kunisawa · 2004 · Journal of Theoretical Biology
31. Nucleus Symbiosis Hypothesis Formation of Eukaryotic Cell Nuclei by the Symbiosis of Archaea in Bacteria
    Takao Shinozawa, Tokumasa Horiike, Kazuo Hamada · 2006 · Kluwer Academic Publishers eBooks
32. Unraveling Phylogenetic Relationships, Reticulate Evolution, and Genome Composition of Polyploid Plant Complexes by Rad-Seq and Hyb-Seq
    Kevin Karbstein, Salvatore Tomasello, Ladislav Hodač, Natascha Dorothea Wagner, Pia Marinček, Birthe H. Barke, Claudia Paetzold, Elvira Hörandl · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
33. Origin and Evolution of Pseudomurein Biosynthetic Gene Clusters
    Valérian Lupo, Célyne Roomans, Edmée Royen, Loïc Ongena, Olivier Jacquemin, Frédéric Kerff, Denis Baurain · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
34. Identification and characterization of archaeal pseudomurein biosynthesis genes through pangenomics
    Valérian Lupo, Célyne Roomans, Edmée Royen, Loïc Ongena, Olivier Jacquemin, C. Mullender, Frédéric Kerff, Denis Baurain · 2025 · mSystems
35. On the Robustness to Gene Tree Rooting (or Lack Thereof) of Triplet-Based Species Tree Estimation Methods
    Tanjeem Azwad Zaman, Rabib Jahin Ibn Momin, Md. Shamsuzzoha Bayzid · 2025 · Lecture notes in computer science
36. Reconstructing ancient protein alphabets: what can we truly infer?
    Stephen D. Fried, Georg K. A. Hochberg, Klára Hlouchová · 2026 · Trends in Genetics
37. Hidden in plain sight: new morpho-molecular data on the cryptic tropical sand goby, Favonigobius reichei (Bleeker, 1854) (Teleostei: Gobiidae: Gobiinae) from the northwestern Indian Ocean
    Hamid Reza Esmaeili, Fatah Zarei, Reza Sadeghi, Vahid Sholeh, Yeganeh Sadeghi, Seyed Hassan Hashemi · 2025 · Marine Biodiversity
38. Methods for detecting horizontal transfer of genes
    Jeffrey G. Lawrence · 2004 · Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics
39. References
    Cecilia Saccone, Graziano Pesole · 2003 · Wiley eBooks
40. Conflicting Timelines: Exploring patterns of mito-nuclear discordance in divergence estimates among tetrapods
    Ekadh Ranganathan, K. Praveen Karanth · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
41. Archaea and the Tree of Life
    Patrick Forterre · 2025 · Wiley eBooks
42. Microorganisms: Extremely Thermophilic
    Steven Randall Gray, Michael W. W. Adams, Robert M. Kelly · 2009 · Encyclopedia of Industrial Biotechnology
43. Biochemical Characterization of the RNA Splicing Endonuclease
    Kate Calvin · 2007
44. Study of Horizontal Gene Transfer in Corynebacteria diphtheriae and its effects by using SOM algorithm
    Bejon Kumar Bhowmick, A.B.M.Rafiqul Islam, Kentaro Shimizu, Rajib Kumar Paul · 2008 · Molecular Genetics Microbiology and Virology
45. Meta-Analysis of General Bacterial Subclades in Whole-Genome Phylogenies Using Tree Topology Profiling
    Thomas Meinel, Antje Krause · 2012 · Evolutionary Bioinformatics
46. Reconstructing the Universal Tree of Life
    James R. Brown · 2007 · Springer eBooks
47. Comparative genomics and early cell evolution
    Antonio Lazcano · 2011 · Cambridge University Press eBooks
48. Structural and functional advances in the evolutionary studies of cells and viruses
    Arshan Nasir · 2015 · Illinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign)
49. Mayr Versus Woese: Akaryotes and Eukaryotes
    C. G. Kurland, Ajith Harish · 2018 · Grand challenges in biology and biotechnology
50. Patterns of septal biomineralization in Scleractinia compared with their 28S rRNA phylogeny: a dual approach for a new taxonomic framework
    J Ean, G Uillaume L Ecointre, S Imon T Illier · 2003
51. Genome Evolution
    Paul G. Higgs, Teresa K. Attwood · 2004
52. A Method for Calculating the Least Mutated Sequence in DNA Alignment Based on Point Mutation Sites
    Libing Shen · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
53. História evolutiva das metaloproteases AAA
    Phellippe Arthur Santos Marbach · 2004
54. The Major Lines of Descent
    Michael Lynch · 2024
55. Decision: Protein structures unravel the signatures and patterns of deep time evolution — R1/PR7
    Ajith Harish · 2023 · QRB Discovery
56. Author comment: Protein structures unravel the signatures and patterns of deep time evolution — R1/PR6
    Ajith Harish · 2023 · QRB Discovery
57. Review: Protein structures unravel the signatures and patterns of deep time evolution — R0/PR4
    Ajith Harish · 2023 · QRB Discovery
58. Decision: Protein structures unravel the signatures and patterns of deep time evolution — R0/PR5
    Ajith Harish · 2023 · QRB Discovery
59. Review: Protein structures unravel the signatures and patterns of deep time evolution — R0/PR2
    Ajith Harish · 2023 · QRB Discovery
60. Author comment: Protein structures unravel the signatures and patterns of deep time evolution — R0/PR1
    Ajith Harish · 2023 · QRB Discovery
61. Review: Protein structures unravel the signatures and patterns of deep time evolution — R0/PR3
    Ajith Harish · 2023 · QRB Discovery
62. Étude de l’origine des eucaryotes par la phylogénie moléculaire
    Nicolas Rochette de Lempdes · 2014
63. Origine des variations de taux d’évolution moléculaire inter-spécifiques : apport d’un modèle génomique en milieu souterrain
    Nathanaëlle Saclier · 2019 · theses.fr (ABES)
64. Phylogenomic study of the evolutionary history of the Archaea and their link with eukaryogenesis
    Monique Aouad · 2018
65. Maturation des ARN messagers mitochondriaux et système traductionnel chez l’algue verte Chlamydomonas reinhardtii
    Herrade Meichel · 2023 · theses.fr (ABES)
66. Crawling under the radar: Two novel Paulinella species expand knowledge about the ecology and evolution of a primary plastid‐containing amoeba lineage
    Julia Van Etten, Sungpil Han, John A. Burns, Duckhyun Lhee, Andrew C. Willoughby, Timothy G. Stephens, Erin E. Chille, Robin S. Sleith, Debashish Bhattacharya, Hwan Su Yoon · 2026 · Journal of Phycology
67. Whole-genome sequencing and phylogenetic analysis of Anolis adenovirus 2 reveals conserved genome organization and gene-specific evolutionary patterns
    Cleo H. Falvey, Anthony J. Geneva · 2026 · Infection Genetics and Evolution