The Rooting of the Universal Tree of Life Is Not Reliable

Cited by (267)

Items 101–200 of 267

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4. Two or three domains: a new view of tree of life in the genomics era
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5. Ubiquity of Sicyopterus lagocephalus (Teleostei: Gobioidei) and phylogeography of the genus Sicyopterus in the Indo-Pacific area inferred from mitochondrial cytochrome b gene
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6. Potential pitfalls of modelling ribosomal RNA data in phylogenetic tree reconstruction: Evidence from case studies in the Metazoa
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7. Excluding Loci With Substitution Saturation Improves Inferences From Phylogenomic Data
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8. Horizontal Transfer of Archaeal Genes into the Deinococcaceae: Detection by Molecular and Computer-Based Approaches
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9. Phylogenetic analysis of mitochondrial LSU rRNA in oniscids
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10. The Last Universal Common Ancestor (LUCA), Simple or Complex?
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11. Rooted phylogeny of the three superkingdoms
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12. Molecular evolution before the origin of species
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13. The late stage of genetic code structuring took place at a high temperature
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    Lockhart, P. J., Howe, C. J., Barbrook, A. C., Larkum, A., Penny, D. · 1999 · Molecular Biology and Evolution
16. Rooting Phylogenies and the Tree of Life While Minimizing Ad Hoc and Auxiliary Assumptions
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18. Evidence for a Gram-positive, Eubacterial Root of the Tree of Life
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19. Exploring data processing strategies in NGS target enrichment to disentangle radiations in the tribe Cardueae (Compositae)
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20. The Chalcidoidea bush of life – a massive radiation blurred by mutational saturation
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21. Reconciliation problems for duplication, loss and horizontal gene transfer
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22. Structural Relationships Among the Ribosomal Stalk Proteins from the Three Domains of Life
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23. Molecular evidence of the survival of subterranean amphipods (Arthropoda) during Ice Age underneath glaciers in Iceland
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24. Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella
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25. Genomics and early cellular evolution. The origin of the DNA world
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26. Expression of otd orthologs in the amphipod crustacean, Parhyale hawaiensis
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27. How Molecules Evolve in Eubacteria
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28. A macroevolutionary role for chromosomal fusion and fission in Erebia butterflies
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29. Universal common ancestry, LUCA, and the Tree of Life: three distinct hypotheses about the evolution of life
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30. ALG11 – A new variable DNA marker for sponge phylogeny: Comparison of phylogenetic performances with the 18S rDNA and the COI gene
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31. Low genetic diversity and population structure of the narrownose shark (Mustelus schmitti)
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32. Evidence for a New Root of the Tree of Life
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33. Phylogenetic Analysis of Evolutionary Relationships of the Planctomycete Division of the Domain Bacteria Based on Amino Acid Sequences of Elongation Factor Tu
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34. Phylogenetic positions of ‘Candidatus Phytoplasma asteris' and Spiroplasma kunkelii as inferred from multiple sets of concatenated core housekeeping proteins
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35. Genomic and Phylogenetic Perspectives on the Evolution of Prokaryotes
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36. Archaea: The First Domain of Diversified Life
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37. Determining the Relative Rates of Change for Prokaryotic and Eukaryotic Proteins with Anciently Duplicated Paralogs
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38. Basal and regulated transcription in Archaea
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39. Mitochondria are not captive bacteria
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40. Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods
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41. An Evaluation of Four Phylogenetic Markers in Nostoc: Implications for Cyanobacterial Phylogenetic Studies at the Intrageneric Level
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42. A DNA and morphology based phylogenetic framework of the ant genus Lasius with hypotheses for the evolution of social parasitism and fungiculture
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43. Akaryotes and Eukaryotes are independent descendants of a universal common ancestor
    Ajith Harish, C. G. Kurland · 2017 · Biochimie
44. Empirical genome evolution models root the tree of life
    Ajith Harish, C. G. Kurland · 2017 · Biochimie
45. Molecular signatures for the Crenarchaeota and the Thaumarchaeota
    Radhey S. Gupta, Ali Shami · 2011 · Antonie van Leeuwenhoek
46. Congruence of evidence for a Methanopyrus-proximal root of life based on transfer RNA and aminoacyl-tRNA synthetase genes
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47. Phylogenetic analysis of lineage relationships among hyperiid amphipods as revealed by examination of the mitochondrial gene, cytochrome oxidase I (COI)
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48. Origin and Distribution of Nitrogen in Soil
    Paul R. Voroney, David Derry · 2008 · Agronomy monograph/Agronomy
49. Assessment of otocephalan and protacanthopterygian concepts in the light of multiple molecular phylogenies
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50. On the conceptual difficulties in rooting the tree of life
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51. Phylogeography of the ancient catfish family Diplomystidae: Biogeographic, systematic, and conservation implications
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52. Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life
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53. Cyanobacterial Evolution: Fresh Insight into Ancient Questions
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54. The Origin(s) of Cell(s): Pre-Darwinian Evolution from FUCAs to LUCA
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55. Changing ideas about eukaryotic origins
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56. The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data
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57. Evidence that the Root of the Tree of Life Is Not within the Archaea
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58. Molecular phylogeny of elasmobranchs inferred from mitochondrial and nuclear markers
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59. Dating the origin and diversification of Pan-Chelidae (Testudines, Pleurodira) under multiple molecular clock approaches
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60. The eocyte hypothesis and the origin of eukaryotic cells
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61. The Last Universal Common Ancestor of Ribosome-Encoding Organisms: Portrait of LUCA
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62. NJML+: An Extension of the NJML Method to Handle Protein Sequence Data and Computer Software Implementation
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63. Gene Arrangements and Phylogeny in the Class Proteobacteria
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64. The phylogenomics of protein structures: The backstory
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65. The Nature of the Last Common Ancestor
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66. Isolation of a minD-like gene in the hyperthermophilic archaeon Pyrococcus AL585, and phylogenetic characterization of related proteins in the three domains of life
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67. Central Carbohydrate Pathways: Metabolic Flexibility and the Extra Role of Some “Housekeeping” Enzymes
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68. A General Substitution Matrix for Structural Phylogenetics
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69. Origin of Eukaryotic Cell Nuclei by Symbiosis of Archaea in Bacteria supported by the newly clarified origin of functional genes.
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70. The largest subunit of RNA polymerase II from the Glaucocystophyta: functional constraint and short-branch exclusion in deep eukaryotic phylogeny
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71. Systematics and Evolution of the Algae. I. Genomics Meets Phylogeny
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72. Searching factors causing implausible non-monophyly: ssu rDNA phylogeny of Isopoda Asellota (Crustacea: Peracarida) and faster evolution in marine than in freshwater habitats
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73. Mitochondrial and Eukaryotic Origins
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74. Gene arrangements and branching orders of gram-positive bacteria
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75. Comparative Analysis of Proteomes and Functionomes Provides Insights into Origins of Cellular Diversification
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76. 5. Prebiotic Chemistry – Biochemistry – Emergence of Life (4.4–2 Ga)
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77. On the Occurrence of Horizontal Gene Transfer Among an Arbitrarily Chosen Group of 26 Genes
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78. Barcoding for diatoms in the Yangtze River from the morphological observation and 18S rDNA polymorphic analysis
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79. On the Origin of Cells and Viruses: A Comparative-Genomic Perspective
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80. Detecting Changes in the Functional Constraints of Paralogous Genes
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81. Complete mitochondrial genomes from four subspecies of common chaffinch (Fringilla coelebs): New inferences about mitochondrial rate heterogeneity, neutral theory, and phylogenetic relationships within the order Passeriformes
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86. Molecular Phylogenetic Analysis of theStegana ornatipesSpecies Group (Diptera: Drosophilidae) in China, with Description of a New Species
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87. Phylogenetic Inference Using Molecular Data
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88. Carl Woese: Still ahead of our time
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89. Codon-based phylogenetics introduces novel flagellar gene markers to oomycete systematics
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90. Phylogenomic analysis of type 1 NADH:Quinone oxidoreductase
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91. Archaea: A Goldmine for Molecular Biologists and Evolutionists
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92. Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles
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93. A prelude to the molecular systematics and diversity of combtooth blennies (Teleostei: Blenniidae) in the Persian Gulf and Oman Sea
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95. Enrichment in conservative amino acid changes among fixed and standing missense variations in slowly evolving proteins
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96. On the Nature of the Last Common Ancestor: A Story from its Translation Machinery
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98. Updating Carbamoylphosphate Synthase (CPS) Phylogenies: Occurrence and Phylogenetic Identity of Archaeal CPS Genes
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99. Species delimitation in Xanthium sect. Acanthoxanthium (Heliantheae, Asteraceae) and the neglected species Xanthium argenteum
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100. Emergence of life-how and where?
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