Cited by 33Origins and Evolution of LifePhilosophy and History of ScienceEvolution and Genetic Dynamics

The Multiple Paths to Multiple Life

Open access
Kempes, Christopher P., Krakauer, David C.·2021·Journal of Molecular Evolution

Abstract

We argue for multiple forms of life realized through multiple different historical pathways. From this perspective, there have been multiple origins of life on Earth—life is not a universal homology. By broadening the class of originations, we significantly expand the data set for searching for life. Through a computational analogy, the origin of life describes both the origin of hardware (physical substrate) and software (evolved function). Like all information-processing systems, adaptive systems possess a nested hierarchy of levels, a level of function optimization (e.g., fitness maximization), a level of constraints (e.g., energy requirements), and a level of materials (e.g., DNA or RNA genome and cells). The functions essential to life are realized by different substrates with different efficiencies. The functional level allows us to identify multiple origins of life by searching for key principles of optimization in different material form, including the prebiotic origin of proto-cells, the emergence of culture, economic, and legal institutions, and the reproduction of software agents.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1007/s00239-021-10016-2

Cites

5 of 5 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • All evolutionary trajectories occur under generic selective constraints such as the laws of mathematics, physics and chemistry, and these should lead to some universal features.

    “First, all evolutionary trajectories occur under certain generic selective constraints, such as the laws of mathematics, physics and chemistry, and these should lead to some universal features [43,44].”

    From Fundamental constraints to the logic of living systems (2024) · cites this paper as [44]

  • Energy is a key consideration in the evolutionary optimization of organisms.

    “Other arguments related to metabolic scaling indicate that energy is a key consideration in the evolutionary optimization of organisms [43,44,104,105].”

    From Fundamental constraints to the logic of living systems (2024) · cites this paper as [44]

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 63

  1. Bains W Cockell C Burchell M Martins Z What do we think life is? A simple illustration and its consequences Int J Astrobiol 2014 13 2 101 10.1017/S1473550413000281 · DOI
  2. Bedau MA McCaskill JS Packard NH Rasmussen S Adami C Green DG Ikegami T Kaneko K Ray TS Open problems in artificial life Artif Life 2000 6 363 376 10.1162/106454600300103683 11348587 · DOI
  3. Benner SA Defining life Astrobiology 2010 10 10 1021 1030 10.1089/ast.2010.0524 21162682 PMC3005285 · DOI
  4. Bialek W Biophysics: searching for principles 2012 Princeton Princeton University Press
  5. Boerlijst MC Hogeweg P Spatial gradients enhance persistence of hypercycles Physica D 1995 88 29 39 10.1016/0167-2789(95)00178-7 · DOI
  6. Brandt A (2002) Multiscale scientific computation: review 2001. In: Multiscale and multiresolution methods. Springer, Berlin, pp 3–95
  7. Chin JW Expanding and reprogramming the genetic code Nature 2017 550 53 60 10.1038/nature24031 28980641 · DOI
  8. Cleland CE Life without definitions Synthese 2012 185 1 125 144 10.1007/s11229-011-9879-7 · DOI
  9. Cleland CE (2019) The quest for a universal theory of life: searching for life as we don’t know it. Cambridge University Press, Cambridge
  10. Cockell CS McMahon S Biddle JF When is life a viable hypothesis? The case of Venusian phosphine Astrobiology 2020 21 3 261 264 10.1089/ast.2020.2390 33337946 · DOI
  11. Cronin L Krasnogor N Davis BG Alexander C Robertson N Steinke JH Schroeder SL Khlobystov AN Cooper G Gardner PM The imitation game—a computational chemical approach to recognizing life Nat Biotechnol 2006 24 10 1203 1206 10.1038/nbt1006-1203 17033651 · DOI
  12. Davies PC Walker SI The hidden simplicity of biology Rep Prog Phys 2016 79 10 102601 10.1088/0034-4885/79/10/102601 27608530 · DOI
  13. Davis M (2018) The universal computer: the road from Leibniz to Turing. A K Peters/CRC Press, New York
  14. DeLong JP Okie JG Moses ME Sibly RM Brown JH Shifts in metabolic scaling, production, and efficiency across major evolutionary transitions of life Proc Nat Acad Sci 2010 107 29 12941 12945 10.1073/pnas.1007783107 20616006 PMC2919978 · DOI · Paper page
  15. Deutsch D The beginning of infinity: explanations that transform the world 2011 London Penguin
  16. Eigen M Molecular self-organization and the early stages of evolution Q Rev Biophys 1971 4 149 212 10.1017/S0033583500000627 5134461 · DOI
  17. England JL Dissipative adaptation in driven self-assembly Nat Nanotechnol 2015 10 919 923 10.1038/nnano.2015.250 26530021 · DOI
  18. Flack J (2017) Life’s information hierarchy. In: Walker SI, Davies PC, Ellis GF (eds) From matter to life: information and causality. Cambridge University Press, Cambridge, p 283
  19. Goldenfeld N Woese C Life is physics: evolution as a collective phenomenon far from equilibrium Annu Rev Condens Matter Phys 2011 2 1 375 399 10.1146/annurev-conmatphys-062910-140509 · DOI
  20. Goldenfeld N Biancalani T Jafarpour F Universal biology and the statistical mechanics of early life Philos Trans R Soc A Math Phys Eng Sci 2017 375 2109 20160341 10.1098/rsta.2016.0341 PMC5686399 29133441 · DOI
  21. Ilker E Hinczewski M Modeling the growth of organisms validates a general relation between metabolic costs and natural selection Phys Rev Lett 2019 122 23 238101 10.1103/PhysRevLett.122.238101 31298905 · DOI
  22. Jablonka E, Lamb MJ (2014) Evolution in four dimensions: Genetic, epigenetic, behavioral, and symbolic variation in the history of life. MIT Press, Cambridge, MA
  23. Kaneko K Life: an introduction to complex systems biology 2006 New York Springer
  24. Kempes CP Dutkiewicz S Follows MJ Growth, metabolic partitioning, and the size of microorganisms Proc Nat Acad Sci 2012 109 2 495 500 10.1073/pnas.1115585109 22203990 PMC3258615 · DOI · Paper page
  25. Kempes CP Wang L Amend JP Doyle J Hoehler T Evolutionary tradeoffs in cellular composition across diverse bacteria ISME J 2016 10 9 2145 2157 10.1038/ismej.2016.21 27046336 PMC4989312 · DOI · Paper page
  26. Kolb VM On the applicability of the Aristotelian principles to the definition of life Int J Astrobiol 2007 6 1 51 10.1017/S1473550407003564 · DOI
  27. Kolchinsky A Wolpert DH Semantic information, autonomous agency and non-equilibrium statistical physics Interface Focus 2018 8 6 20180041 10.1098/rsfs.2018.0041 30443338 PMC6227811 · DOI
  28. Krakauer DC Darwinian demons, evolutionary complexity, and information maximization Chaos 2011 21 037110 10.1063/1.3643064 21974673 · DOI
  29. Krakauer D (2017) Cryptographic nature. In: Walker SI, Davies PC, Ellis GF (eds) From matter to life: information and causality. Cambridge University Press, Cambridge, pp 157–173
  30. Krakauer DC Jansen VA Red queen dynamics of protein translation J Theor Biol 2002 218 1 97 109 10.1006/jtbi.2002.3054 12297073 · DOI
  31. Krakauer DC Zanotto PMA Rasmussen S Bedau MA Chen L Deamer D Krakauer DC Packard NH Stadler PF Viral individuality and limitations of the life concept Protocells: bridging nonliving and living matter 2009 Cambridge MIT Press
  32. Krakauer D Bertschinger N Olbrich E Flack JC Ay N The information theory of individuality Theory Biosci 2020 13 209 223 10.1007/s12064-020-00313-7 PMC7244620 32212028 · DOI
  33. Küppers B-O Information and the origin of life 1990 Cambridge MIT Press
  34. Lane N Martin W The energetics of genome complexity Nature 2010 467 7318 929 934 10.1038/nature09486 20962839 · DOI · Paper page
  35. Langton CG Self-reproduction in cellular automata Physica D 1984 10 1–2 135 144 10.1016/0167-2789(84)90256-2 · DOI · Paper page
  36. Langton CG Taylor C Farmer JD Rasmussen S Artificial Life II: Santa Fe Institute Studies in the Sciences of Complexity, Proceedings 1992 Redwood City Addison-Wesley
  37. Langton CG Taylor C Farmer JD Rasmussen S Artificial Life III, Santa Fe Institute studies in the science of complexity 1994 Redwood City Addison-Wesley
  38. Lewis FT The correlation between cell division and the shapes and sizes of prismatic cells in the epidermis of cucumis Anat Rec 1928 38 3 341 376 10.1002/ar.1090380305 · DOI
  39. Lynch M Marinov GK The bioenergetic costs of a gene Proc Nat Acad Sci 2015 112 51 15690 15695 10.1073/pnas.1514974112 26575626 PMC4697398 · DOI · Paper page
  40. Mann S Chen YP Bacterial genomic G + C composition-eliciting environmental adaptation Genomics 2010 95 1 7 15 10.1016/j.ygeno.2009.09.002 19747541 · DOI
  41. Marshall SM Murray AR Cronin L A probabilistic framework for identifying biosignatures using pathway complexity Philos Trans R Soc A Math Phys Eng Sci 2017 375 2109 20160342 10.1098/rsta.2016.0342 PMC5686400 29133442 · DOI
  42. Morowitz HJ Some order–disorder considerations in living systems Bull Math Biophys 1955 17 2 81 86 10.1007/BF02477985 · DOI
  43. Morowitz H Smith E Energy flow and the organization of life Complexity 2007 13 1 51 59 10.1002/cplx.20191 · DOI · Paper page
  44. Murray A, Marshall S, Cronin L (2018) Defining pathway assembly and exploring its applications, arXiv preprint arXiv:1804.06972 · arXiv
  45. Niklas K Plant allometry: the scaling of form and process 1994 Chicago University of Chicago Press
  46. Nowak MA Krakauer DC Dress A An error limit for the evolution of language Proc R Soc Lond Ser B Biol Sci 1999 266 2131 2136 10.1098/rspb.1999.0898 PMC1690318 10902547 · DOI
  47. Savage V Gillooly J Woodruff W West G Allen A Enquist B Brown J The predominance of quarter-power scaling in biology Funct Ecol 2004 18 257 282 10.1111/j.0269-8463.2004.00856.x · DOI · Paper page
  48. Scharf C Virgo N Cleaves HJ A strategy for origins of life research Astrobiology 2015 15 12 1031 10.1089/ast.2015.1113 26684503 PMC4683543 · DOI · Paper page
  49. Schmidt-Nielsen K Knut S-N Scaling: why is animal size so important? 1984 Cambridge Cambridge University Press
  50. Schrodinger E (1944) What is life? Cambridge University Press, Cambridge
  51. Smith P (2020) The Church–Turing thesis. In: An introduction to Gödel’s theorems. Cambridge University Press, Cambridge, pp 338–347
  52. Smith E (2008) Thermodynamics of natural selection I: energy flow and the limits on organization. J Theor Biol 252(2):185–197 18367210
  53. Smith E Morowitz HJ Universality in intermediary metabolism Proc Nat Acad Sci 2004 101 36 13168 13173 10.1073/pnas.0404922101 15340153 PMC516543 · DOI · Paper page
  54. Sousa-Silva C Seager S Ranjan S Petkowski JJ Zhan Z Hu R Bains W Phosphine as a biosignature gas in exoplanet atmospheres Astrobiology 2020 20 2 235 268 10.1089/ast.2018.1954 31755740 · DOI
  55. Steiner N, Athanas P (2005) Hardware–software interaction: Preliminary observations. In: 19th IEEE International Parallel and Distributed Processing Symposium
  56. Trifonov EN Vocabulary of definitions of life suggests a definition J Biomol Struct Dyn 2011 29 2 259 266 10.1080/073911011010524992 21875147 · DOI
  57. Villarreal LP Are viruses alive? Scientific American 2004 291 6 100 105 10.1038/scientificamerican1204-100 15597986 · DOI
  58. von Neumann J Burkd AW Theory of self-reproducing automata 1966 Champaign University of IIlinois Press
  59. Walker SI Davies PC The algorithmic origins of life J R Soc Interface 2013 10 79 20120869 10.1098/rsif.2012.0869 23235265 PMC3565706 · DOI · Paper page
  60. Walker SI Packard N Cody G Re-conceptualizing the origins of life Philos Trans Ser A Math Phys Eng Sci 2017 10.1098/rsta.2016.0337 PMC5686397 29133439 · DOI · Paper page
  61. Walker SI Bains W Cronin L DasSarma S Danielache S Domagal-Goldman S Kacar B Kiang NY Lenardic A Reinhard CT Exoplanet biosignatures: future directions Astrobiology 2018 18 6 779 824 10.1089/ast.2017.1738 29938538 PMC6016573 · DOI
  62. West G Brown J The origin of allometric scaling laws in biology from genomes to ecosystems: towards a quantitative unifying theory of biological structure and organization J Exp Biol 2005 208 9 1575 1592 10.1242/jeb.01589 15855389 · DOI
  63. Yockey HP Information theory, evolution, and the origin of life 2005 Cambridge Cambridge University Press

Cited by

Sorted by citations

Authors
Kempes, C. P., & Krakauer, D. C.
Affiliations
Santa Fe Institute (US)
Corresponding author
Kempes, Christopher P.
Venue
Journal of Molecular Evolution
Published
2021-07-12
Volume
89
Issue
7
Pages
415-426
ISSN
  • 0022-2844 (ISSN-L)
  • 1432-1432
OpenAlex
W3180641939
Cited by
33
References
5
Citations by year
2026: 5 · 2025: 7 · 2024: 4 · 2023: 7 · 2022: 7 · 2021: 3
FWCI
0.47
Type
journal article
Language
en
Open access
Locations
  • Journal of Molecular Evolution (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
Funders
Division of Environmental Biology (1745355)
Topics
  • Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
  • Social Sciences › Arts and Humanities › History and Philosophy of Science › Philosophy and History of Science
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
Keywords
origin of life, homology, adaptive systems, nested hierarchy, function optimization, emergence of culture, software agents, search for life, information processing systems
MeSH terms
Origin of Life, DNA, RNA, Genome, Earth, Planet

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review