The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Multiscale modeling of lipids and lipid bilayers
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Citations
Cites
Coarse Grained Model for Semiquantitative Lipid Simulations
Marrink, S. J., de Vries, A. H., & Mark, A. E. (2004) · The Journal of Physical Chemistry B · doi:10.1021/jp036508g · Cited by 2,257
Deriving effective mesoscale potentials from atomistic simulations
Reith, D., Pütz, M., & Müller‐Plathe, F. (2003) · Journal of Computational Chemistry · doi:10.1002/jcc.10307 · Cited by 1,314
Lyubartsev, A. P., & Laaksonen, A. (1995) · Physical Review E · doi:10.1103/physreve.52.3730 · Cited by 852 · cited 2×
“Recently also an approach was developed, now called multiscale modeling, to derive interaction potentials for coarse-grained models from the atomistic simulations (Lyubartsev and Laaksonen 1995, 2004; Reith et al. 2003).”
MethodSelf-citation
Research works printed but not linked: 26
- Feller SE, MacKerell AD (2000) An improved empirical potential energy function for molecular simulations of phospholipids. J Phys Chem B 104:7510–7515 · DOI · Paper page
- Goetz R, Gompper G, Lipowsky R (1999) Mobility and elasticity of self-assembled membranes. Phys Rev Lett 82:221–224 · DOI · Paper page
- Kranenburg M, Venturoli M, Smit B (2003) Phase behavior and induced interdigitation in bilayers studied with dissipative particle dynamics. J Phys Chem B 107:11491–11501 · DOI · Paper page
- Kranenburg M, Nicolas J-P, Smit B (2004) Comparison of mesoscopic phospholipid - water models. Phys Chem Chem Phys 6(16):4142–4151 · DOI
- Lindahl E, Edholm O (2000) Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations. Biophys J 79:426–433 · DOI · Paper page
- Lobaskin V, Lyubartsev AP, Linse P (2001) Effective macroion-macroion potentials in assymmetric electrolytes. Phys Rev E 63:020401 · DOI
- Lowe CP (1999) An alternative approach to dissipative particle dynamics. Europhys Lett 47:145–151 · DOI · Paper page
- Lyubartsev AP, Laaksonen A (1997) Osmotic and activity coefficients from effective potentials for hydrated ions. Phys Rev E 55(5):5689–5696 · DOI
- Lyubartsev AP, Laaksonen A (1999) Effective potentials for ion – DNA interactions. J Chem Phys 111(24):11207–11215 · DOI
- Lyubartsev AP, Laaksonen A (2000) A general and scalable parallel software package for arbitrary mixtures of molecules. Comput Phys Commun 128:565–589 · DOI · Paper page
- Lyubartsev AP, Laaksonen A (2004) On the reduction of molecular degrees of freedom in computer simulations. Lect Notes Phys 640:219–244 · doi:10.1007/978-3-540-39895-0_7
- Marrink SJ, Berendsen HJC (1994) Simulation of water transport through a lipid membrane. J Phys Chem 98:4155–4168 · DOI · Paper page
- Marrink SJ, Mark AE (2003) Molecular dynamics simulation of the formation, structure, and dynamics of small phospholipid vesicles. J Am Chem Soc 125(49):15233–15242 · DOI · Paper page
- Martyna GJ, Tuckerman ME, Tobias DJ, Klein ML (1996) Explicit reversible integrators for extended systems dynamics. Mol Phys 87(5):1117–1157 · DOI · Paper page
- Noguchi H, Takasu M (2001) Self-assembly of amphiphiles into vesicles: a brownian dynamics simulation. Phys Rev E 64:041913 · DOI · Paper page
- Norberg J, Nilsson L (2003) Advances in biomolecular simulations: methodology and recent applications. Quart Rev Biophys 36:257–306 · doi:10.1017/s0033583503003895
- Patra M, Karttunen M, Hyvönen MT, Falck E, Lindqvist P, Vattulainen I (2003) Molecular dynamics simulations of lipid bilayers: Major artifacts due to truncating electrostatic interactions. Biophys J 84:3636–3645 · doi:10.1016/s0006-3495(03)75094-2
- Shelley JC, Shelley MY, Reeder RC, Bandyopadhyay S, Klein ML (2001) A coarse grained model for phospholipid simulations. J Phys Chem B 105:4464–4470 · DOI · Paper page
- Soper AK (1996) Empirical potential Monte Carlo simulation of fluid structure. Chem Phys 202:295–306 · DOI · Paper page
- Stevens MJ (2004) Coarse-grained simulations of lipid bilayers. J Chem Phys 121(23):11942–11948 · DOI
- Sum AK, Faller R, de Pablo JJ (2003) Molecular simulation study of phospholipid bilayers and insights of the interactions with disaccharides. Biophys J 85(5):2830–2844 · DOI · Paper page
- Tieleman DP, Marrink SJ, Berendsen HJC (1997) A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems. Biochim Biophys Acta 1331:235–270 · DOI · Paper page
- Tielerman DP, Biggin PC, Smith GR, Sansom MSP (2001) Simulation approaches to ion channel structure–function relationships. Quart Rev Biophys 34:473–561 · doi:10.1017/s0033583501003729
- Toukan K, Rahman A (1985) Molecular dynamics study of atomic motions in water. Phys Rev B 31:2643–2648 · DOI · Paper page
- Wang W, Donini O, Reyes CM, Kollman PA (2001) Biomolecular simulations: recent developments in force fields, simulations of enzyme catalysis, protein-ligand, protein-protein, and protein-nucleic acid noncovalent interactions. Annu Rev Biophys Biomol Struct 30:211–243 · DOI · Paper page
- Yamamoto S, Maruyama Y, Hyodo S (2002) Dissipative particle dynamics study of spontaneous vesicle formation of amphiphilic molecules. J Chem Phys 116:5842–5849 · DOI · Paper page
Cited by
Physical Principles of Nanoparticle Cellular Endocytosis
Zhang, S., Gao, H., & Bao, G. (2015) · ACS Nano · doi:10.1021/acsnano.5b03184 · Cited by 1,103
Perspective: Coarse-grained models for biomolecular systems
Noid, W. G. (2013) · The Journal of Chemical Physics · doi:10.1063/1.4818908 · Cited by 893
The power of coarse graining in biomolecular simulations
Ingólfsson, H. I., Lopez, C. A., Uusitalo, J. J., de Jong, D. H., Gopal, S. M., Periole, X., & Marrink, S. J. (2014) · WIREs Computational Molecular Science · doi:10.1002/wcms.1169 · Cited by 572
Versatile object-oriented toolkit for coarse-graining applications
Rühle, V., Junghans, C., Lukyanov, A., Kremer, K., & Andrienko, D. (2009) · Journal of Chemical Theory and Computation · doi:10.1021/ct900369w · Cited by 485
Multi-property fitting and parameterization of a coarse grained model for aqueous surfactants
Shinoda, W., DeVane, R., & Klein, M. L. (2007) · Molecular Simulation · doi:10.1080/08927020601054050 · Cited by 477
Metadata
- Authors
- Lyubartsev, A. P.
- Venue
- European Biophysics Journal
- Published
- 2005-08-31
- Volume
- 35
- Issue
- 1
- Pages
- 53-61
- ISSN
- 0175-7571 (ISSN-L)
- 1432-1017
- OpenAlex
- W2039300290
- Cited by
- 158
- References
- 3
- FWCI
- 3.80
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
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- Lyubartsev, A. P. (2005). Multiscale modeling of lipids and lipid bilayers. European Biophysics Journal. https://doi.org/10.1007/s00249-005-0005-y
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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