Cited by 21Monoclonal and Polyclonal Antibodies ResearchProtein purification and stabilityBacterial Genetics and Biotechnology

A microbial expression system for high-level production of scFv HIV-neutralizing antibody fragments in Escherichia coli

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Petrus, Marloes L. C., Kiefer, Lukas A., Puri, Pranav, Heemskerk, Evert, Seaman, Michael S., Barouch, Dan H., Arias, Sagrario, van Wezel, Gilles P. +1 more·2019·Applied Microbiology and Biotechnology

Abstract

Monoclonal antibodies (mABs) are of great biopharmaceutical importance for the diagnosis and treatment of diseases. However, their production in mammalian expression hosts usually requires extensive production times and is expensive. Escherichia coli has become a new platform for production of functional small antibody fragment variants. In this study, we have used a rhamnose-inducible expression system that allows precise control of protein expression levels. The system was first evaluated for the cytoplasmic production of super folder green fluorescence protein (sfGFP) in various production platforms and then for the periplasmic production of the anti-HIV single-chain variable antibody fragment (scFv) of PGT135. Anti-HIV broadly neutralizing antibodies, like PGT135, have potential for clinical use to prevent HIV transmission, to promote immune responses and to eradicate infected cells. Different concentrations of L-rhamnose resulted in the controlled production of both sfGFP and scFv PGT135 antibody. In addition, by optimizing the culture conditions, the amount of scFv PGT135 antibody that was expressed soluble or as inclusions bodies could be modulated. The proteins were produced in batch bioreactors, with yields of 4.9 g/L for sfGFP and 0.8 g/L for scFv. The functionality of the purified antibodies was demonstrated by their ability to neutralize a panel of different HIV variants in vitro. We expect that this expression system will prove very useful for the development of a more cost-effective production process for proteins and antibody fragments in microbial cells.

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  • Using the pSAR2 plasmid with a rhamnose promoter, the scFv PGT135 antibody fragment was successfully produced in the periplasmic space, with amounts up to about 1.2 g/L of biologically active scFv PGT135 recovered.

    “In particular, by using the pSAR2 plasmid with a rhamnose promoter, the scFv PGT135 antibody fragment was successfully produced in the periplasmic space. Amounts up to about 1.2 g/L of the biologically active scFv PGT135 were recovered [71].”

    From Evolution of Escherichia coli Expression System in Producing Antibody Recombinant Fragments (2020) · cites this paper as [71]

    The Results and Discussion report that the rhamnose-inducible pSAR-2 vector produced PGT135 scFv directed to the periplasm, and that the purified fragment was biologically active. But the approximately 1.2 g/L figure (1182 ± 2 mg/L) is the amount measured in total cells in shaker flasks, not the amount of active antibody recovered: about 0.5 g/L was soluble, and the Discussion reports about 58 mg/L purified. (LLM, conf=0.93)

    Experimental — accuracy not yet measured
  • Petrus and coworkers reported a robust scalable expression system for production of scFvs in the periplasmic space based on the pSAR-2 vector, obtaining HIV-neutralizing PGT135 scFv with a yield of 1.2 g/L after 48 h induction at 25 °C using 15 mM l-rhamnose in shake flasks.

    “The HIV-neutralizing PGT135 scFv antibody fragment was obtained with an outstanding yield of 1.2 g/L after 48 h of induction at 25 °C using 15 mM l-rhamnose in shake flasks [71].”
  • Expression of an scFv antibody fragment using the novel vector pSAR-2 containing the pelB leader sequence and the rhamnose-inducible expression promoter obtained a yield of 1.2 g/L.

    “Recently, the expression of an scFv antibody fragment has been used as a showcase for validating the efficacy of the novel vector pSAR-2 containing the pelB leader sequence and the rhamnose-inducible expression promoter, obtaining a yield of 1.2 g/L [71].”

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Research works printed but not linked: 37

  1. Ahmad ZA Yeap SK Ali AM Ho WY Alitheen NBM Hamid M scFv antibody: principles and clinical application Clin Dev Immunol 2012 2012 1 15 10.1155/2012/980250 PMC3312285 22474489 · DOI
  2. Ausubel FM Brent R Kingston RE Moore DD Seidman JG Smith JA Struhl K Current protocols in molecular biology 1989 Media Wiley
  3. Balbás P Soberón X Merino E Zurita M Lomeli H Valle F Flores N Bolivar F Plasmid vector pBR322 and its special-purpose derivatives — a review Gene 1986 50 3 40 10.1016/0378-1119(86)90307-0 3034735 · DOI
  4. Berwal SK Sreejith RK Pal JK Distance between RBS and AUG plays an important role in overexpression of recombinant proteins Anal Biochem 2010 405 275 277 10.1016/J.AB.2010.06.003 20570627 · DOI
  5. Cesareni G Helmer-Citterich M Castagnoli L Control of ColE1 plasmid replication by antisense RNA Trends Genet 1991 7 230 235 10.1016/0168-9525(91)90370-6 1887504 · DOI
  6. Chaib F Bernier A Braendli E Towards large scale methods for the selective release of periplasmic human cystatin C from E. coli Biotechnol Tech 1995 9 179 184 10.1007/BF00157075 · DOI
  7. Chames P Van Regenmortel M Weiss E Baty D Therapeutic antibodies: successes, limitations and hopes for the future Br J Pharmacol 2009 157 220 233 10.1111/j.1476-5381.2009.00190.x 19459844 PMC2697811 · DOI · Paper page
  8. Chen H Bjerknes M Kumar R Jay E Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs Nucleic Acids Res 1994 22 4953 4957 10.1093/nar/22.23.4953 7528374 PMC523762 · DOI
  9. Dalbøge H Jensen EB Tøttrup H Grubb A Abraharmson M Olafsson I Carlsen S High-level expression of active human cystatin C in Escherichia coli Gene 1989 79 325 332 10.1016/0378-1119(89)90214-X 2529167 · DOI
  10. Drocourt D Calmels T Reynes JP Baron M Tiraby G Cassettes of the Streptoalloteichus hindustanus ble gene for transformation of lower and higher eukaryotes to phleomycin resistance Nucleic Acids Res 1990 18 4009 10.1093/nar/18.13.4009 1695734 PMC331125 · DOI
  11. Frenzel A Hust M Schirrmann T Expression of recombinant antibodies Front Immunol 2013 4 217 10.3389/fimmu.2013.00217 23908655 PMC3725456 · DOI
  12. Gaciarz A Veijola J Uchida Y Saaranen MJ Wang C Hörkkö S Ruddock LW Systematic screening of soluble expression of antibody fragments in the cytoplasm of E. coli Microb Cell Fact 2016 15 22 10 10.1186/s12934-016-0419-5 26809624 PMC4727284 · DOI · Paper page
  13. Giacalone M Gentile A Lovitt B Berkley N Gunderson C Surber M Toxic protein expression in Escherichia coli using a rhamnose-based tightly regulated and tunable promoter system Biotechniques 2006 40 355 364 10.2144/000112112 16568824 · DOI
  14. Grilo AL, Mantalaris A (2019). The increasingly human and profitable antibody market. Trends Biotechnol 37:9-16. 29945725
  15. He Chuan Ye Pei Wang Haibin Liu Xiao Li Feng A systematic mass-transfer modeling approach for mammalian cell culture bioreactor scale-up Biochemical Engineering Journal 2019 141 173 181 10.1016/j.bej.2018.09.019 · DOI
  16. Hjelm A Karyolaimos A Zhang Z Rujas E Vikström D Slotboom DJ de Gier J-W Tailoring Escherichia coli for the l -rhamnose P BAD promoter-based production of membrane and secretory proteins ACS Synth Biol 2017 6 985 994 10.1021/acssynbio.6b00321 28226208 · DOI
  17. Jalalirad R (2013) Production of antibody fragment (Fab) throughout Escherichia coli fed-batch fermentation process: changes in titre, location and form of product. Electron J Biotechnol 16. 10.2225/vol16-issue3-fulltext-15 · DOI
  18. Jozala AF Geraldes DC Tundisi LL de A Feitosa V Breyer CA Cardoso SL Mazzola PG de Oliveira-Nascimento L de O Rangel-Yagui C de O Magalhães P de Oliveira MA Pessoa A Jr Biopharmaceuticals from microorganisms: from production to purification Braz J Microbiol 2016 47 51 63 10.1016/j.bjm.2016.10.007 27838289 PMC5156500 · DOI
  19. Kaplon H Reichert JM Antibodies to watch in 2018 MAbs 2018 10 183 203 10.1080/19420862.2018.1415671 29300693 PMC5825203 · DOI
  20. Kelly CL Liu Z Yoshihara A Jenkinson SF Wormald MR Otero J Estevez A Kato A Marqvorsen MHS Fleet GWJ Estevez RJ Izumori K Heap JT Synthetic chemical inducers and genetic decoupling enable orthogonal control of the rhaBAD promoter ACS Synth Biol 2016 5 1136 1145 10.1021/acssynbio.6b00030 27247275 · DOI
  21. Lane MC Alteri CJ Smith SN Mobley HLT Expression of flagella is coincident with uropathogenic Escherichia coli ascension to the upper urinary tract Proc Natl Acad Sci U S A 2007 104 16669 16674 10.1073/pnas.0607898104 17925449 PMC2034267 · DOI
  22. Marschall L Sagmeister P Herwig C Tunable recombinant protein expression in E. coli: promoter systems and genetic constraints Appl Microbiol Biotechnol 2017 101 501 512 10.1007/s00253-016-8045-z 27999902 PMC5566544 · DOI · Paper page
  23. Mesgari-Shadi A Sarrafzadeh MH Osmotic conditions could promote scFv antibody production in the Escherichia coli HB2151 BioImpacts 2017 7 199 206 10.15171/bi.2017.23 29159147 PMC5684511 · DOI
  24. Mesgari-Shadi A Sarrafzadeh M-H Barar J Omidi Y Cost-effective batch production process of scFv antibody in Escherichia coli Hum Antibodies 2018 26 149 157 10.3233/HAB-180333 29526846 · DOI
  25. Montefiori DC Prasad VR Kalpana GV Measuring HIV neutralization in a luciferase reporter gene assay HIV protocols. Methods in molecular biology 2009 Totowa Humana Press 395 405 19020839
  26. Nelson AL Antibody fragments: hope and hype MAbs 2010 2 77 83 10.4161/mabs.2.1.10786 20093855 PMC2828581 · DOI
  27. Norrander J Kempe T Messing J Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis Gene 1983 26 101 106 10.1016/0378-1119(83)90040-9 6323249 · DOI
  28. Pédelacq J-D Cabantous S Tran T Terwilliger TC Waldo GS Engineering and characterization of a superfolder green fluorescent protein Nat Biotechnol 2006 24 79 88 10.1038/nbt1172 16369541 · DOI
  29. Rathore AS Bilbrey RE Steinmeyer DE Optimization of an osmotic shock procedure for isolation of a protein product expressed in E. coli Biotechnol Prog 2003 19 1541 1546 10.1021/bp034030s 14524717 · DOI
  30. Rodrigo G Gruvegård M Van Alstine J Antibody fragments and their purification by Protein L affinity chromatography Antibodies 2015 4 259 277 10.3390/antib4030259 · DOI
  31. Sambrook J Fritsch EF Maniatis T Fritschi EF Molecular cloning: a laboratory manual 1989 New York Cold Spring Harbor Laboratory Press
  32. Sarzotti-Kelsoe M Bailer RT Turk E Lin C Bilska M Greene KM Gao H Todd CA Ozaki DA Seaman MS Mascola JR Montefiori DC Optimization and validation of the TZM-bl assay for standardized assessments of neutralizing antibodies against HIV-1 J Immunol Methods 2014 409 131 146 10.1016/j.jim.2013.11.022 24291345 PMC4040342 · DOI
  33. Schlegel S Rujas E Ytterberg AJ Zubarev RA Luirink J de Gier J-W Optimizing heterologous protein production in the periplasm of E. coli by regulating gene expression levels Microb Cell Fact 2013 12 24 10.1186/1475-2859-12-24 23497240 PMC3605120 · DOI
  34. Scott AM Allison JP Wolchok JD Monoclonal antibodies in cancer therapy Cancer Immun 2012 12 14 22896759 PMC3380347
  35. Smilek DE Ehlers MR Nepom GT Restoring the balance: immunotherapeutic combinations for autoimmune disease Dis Model Mech 2014 7 503 513 10.1242/dmm.015099 24795433 PMC4007402 · DOI
  36. Spadiut O Capone S Krainer F Glieder A Herwig C Microbials for the production of monoclonal antibodies and antibody fragments Trends Biotechnol 2014 32 54 60 10.1016/j.tibtech.2013.10.002 24183828 PMC3906537 · DOI
  37. Wegerer A Sun T Altenbuchner J Optimization of an E. coli L-rhamnose-inducible expression vector: test of various genetic module combinations BMC Biotechnol 2008 8 2 12 10.1186/1472-6750-8-2 18194555 PMC2254391 · DOI

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Authors
Petrus, M. L. C., Kiefer, L. A., Puri, P., Heemskerk, E., Seaman, M. S., Barouch, D. H., Arias, S., van Wezel, G. P., & Havenga, M.
Affiliations
  • Leiden University (NL)
  • Batavia Biosciences (Netherlands) (NL)
  • Beth Israel Deaconess Medical Center (US)
Corresponding author
Havenga, Menzo
Venue
Applied Microbiology and Biotechnology
Published
2019-10-22
Volume
103
Issue
21-22
Pages
8875-8888
ISSN
  • 0175-7598 (ISSN-L)
  • 1432-0614
OpenAlex
W2981899766
Cited by
21
References
4
Citations by year
2026: 4 · 2025: 6 · 2024: 2 · 2022: 4 · 2021: 2 · 2020: 3
FWCI
1.49
Type
journal article
Language
en
Open access
Locations
  • Applied Microbiology and Biotechnology (publishedVersion, cc-by)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Leiden Repository (Leiden University) (submittedVersion, cc-by)
  • Data Archiving and Networked Services (DANS) (submittedVersion, cc-by)
Funders
Leiden University
Topics
  • Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Monoclonal and Polyclonal Antibodies Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein purification and stability
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
Keywords
scFv antibody fragments, HIV neutralizing antibodies, Escherichia coli expression, superfolder GFP, inclusion bodies, batch bioreactor, HIV prevention, monoclonal antibodies
MeSH terms
Antibodies, Monoclonal, Escherichia coli, Promoter Regions, Genetic, HIV Antibodies, HIV-1, HIV Infections, Gene Expression, Bioreactors, Single-Chain Antibodies, Antibodies, Neutralizing

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