The Involvement of DNA Methylation in Plant Growth Regulators-Mediated Growth in Tomato (Solanum lycopersicum) Seedlings
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
DNA methylation involves covalent attachment of methyl groups to cytosine nucleotides, primarily resulting in 5-methylcytosine (5mC), N6-methyladenine (6mA), and N4-methylcytosine (4mC).
“DNA methylation involves the covalent attachment of methyl groups to cytosine nucleotides, primarily resulting in three types of methylated bases: 5-methylcytosine (5 mC), N6-methyladenine (6 mA), and N4-methylcytosine (4 mC) [51].”
From Somaclonal Variation and Clonal Fidelity in Commercial Micropropagation: Challenges and Perspectives (2025) · cites this paper as [51]
Cites
Analyzing real-time PCR data by the comparative CT method
Schmittgen, T. D., & Livak, K. J. (2008) · Nature Protocols · doi:10.1038/nprot.2008.73 · Cited by 26,190 · see citing works
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Law, J. A., & Jacobsen, S. E. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2719 · Cited by 3,868 · see citing works
Dynamics and function of DNA methylation in plants
Zhang, H., Lang, Z., & Zhu, J. (2018) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-018-0016-z · Cited by 1,829 · see citing works
Self-citationAbscisic acid dynamics, signaling, and functions in plants
Chen, K., Li, G., Bressan, R. A., Song, C., Zhu, J., & Zhao, Y. (2019) · Journal of Integrative Plant Biology · doi:10.1111/jipb.12899 · Cited by 1,698 · see citing works
RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
Matzke, M. A., & Mosher, R. A. (2014) · Nature Reviews Genetics · doi:10.1038/nrg3683 · Cited by 1,662 · see citing works
Plant hormone regulation of abiotic stress responses
Waadt, R., Seller, C. A., Hsu, P., Takahashi, Y., Munemasa, S., & Schroeder, J. I. (2022) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-022-00479-6 · Cited by 1,448 · see citing works
Jasmonic Acid Signaling Pathway in Plants
Ruan, J., Zhou, Y., Zhou, M., Yan, J., Khurshid, M., Weng, W., Cheng, J., & Zhang, K. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20102479 · Cited by 818 · see citing works
ROS1, a Repressor of Transcriptional Gene Silencing in Arabidopsis, Encodes a DNA Glycosylase/Lyase
Gong, Z., Morales‐Ruíz, T., Ariza, R. R., Roldán‐Arjona, T., David, L., & Zhu, J. (2002) · Cell · doi:10.1016/s0092-8674(02)01133-9 · Cited by 774 · see citing works
Lang, Z., Wang, Y., Tang, K., Tang, D., Datsenka, T., Cheng, J., Zhang, Y., Handa, A. K., & Zhu, J. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1705233114 · Cited by 536 · see citing works
Phytohormones in fruit development and maturation
Fenn, M., & Giovannoni, J. J. (2020) · The Plant Journal · doi:10.1111/tpj.15112 · Cited by 491 · see citing works
Role of jasmonic acid in plants: the molecular point of view
Ghorbel, M., Brini, F., Sharma, A., & Landi, M. (2021) · Plant Cell Reports · doi:10.1007/s00299-021-02687-4 · Cited by 391 · see citing works
A DEMETER-like DNA demethylase governs tomato fruit ripening
Liu, R., How‐Kit, A., Stammitti, L., Teyssier, E., Rolin, D., Mortain‐Bertrand, A., Halle, S., Liu, M., Kong, J., Wu, C., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1503362112 · Cited by 372 · see citing works
Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases
Zhong, X., Du, J., Hale, C. J., Gallego‐Bartolomé, J., Feng, S., Vashisht, A. A., Chory, J., Wohlschlegel, J. A., Patel, D. J., & Jacobsen, S. E. (2014) · Cell · doi:10.1016/j.cell.2014.03.056 · Cited by 323 · see citing works
He, L. S., Huang, H., Bradai, M., Zhao, C., You, Y., Ma, J., Zhao, L., Lozano‐Durán, R., & Zhu, J. (2022) · Nature Communications · doi:10.1038/s41467-022-28940-2 · Cited by 231 · see citing works
Epigenetic Mechanisms Underlying Genomic Imprinting in Plants
Köhler, C., Wolff, P., & Spillane, C. (2012) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-042811-105514 · Cited by 196 · see citing works
DNA Methylation in Plant Responses and Adaption to Abiotic Stresses
Sun, M., Yang, Z., Liu, L., & Duan, L. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23136910 · Cited by 193 · see citing works
The mechanism and function of active DNA demethylation in plants
Liu, R., & Lang, Z. (2019) · Journal of Integrative Plant Biology · doi:10.1111/jipb.12879 · Cited by 168 · see citing works
Gupta, A., Hisano, H., Hojo, Y., Matsuura, T., Ikeda, Y., Mori, I. C., & Senthil‐Kumar, M. (2017) · Scientific Reports · doi:10.1038/s41598-017-03907-2 · Cited by 164 · see citing works
Conserved imprinting associated with unique epigenetic signatures in the Arabidopsis genus
Klosinska, M. M., Picard, C. L., & Gehring, M. A. (2016) · Nature Plants · doi:10.1038/nplants.2016.145 · Cited by 129 · see citing works
Hydrogen sulfide: Roles in plant abiotic stress response and crosstalk with other signals
Huang, D., Huo, J., & Liao, W. (2020) · Plant Science · doi:10.1016/j.plantsci.2020.110733 · Cited by 125 · see citing works
Self-citationPlant cytosine-5 DNA methyltransferases: Structure, function, and molecular evolution
Pavlopoulou, A., & Κοσσίδα, Σ. (2007) · Genomics · doi:10.1016/j.ygeno.2007.06.011 · Cited by 122 · see citing works
Xiao, K., Chen, J., He, Q., Wang, Y., Shen, H., & Sun, L. (2020) · Journal of Experimental Botany · doi:10.1093/jxb/eraa003 · Cited by 109 · see citing works
New insights into gibberellin signaling in regulating plant growth–metabolic coordination
Wu, K., Xu, H., Gao, X., & Fu, X. (2021) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2021.102074 · Cited by 104 · see citing works
Hydrogen Sulfide: A Gaseous Molecule in Postharvest Freshness
Huo, J., Huang, D., Zhang, J., Fang, H., Wang, B., Wang, C., & Liao, W. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.01172 · Cited by 91 · see citing works
Self-citationKumar, K., Rai, N., & Rai, S. P. (2018) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2018.04.023 · Cited by 89 · see citing works
Hydrogen Sulfide Maintains Mitochondrial DNA Replication via Demethylation of TFAM
Li, S., & Yang, G. (2015) · Antioxidants and Redox Signaling · doi:10.1089/ars.2014.6186 · Cited by 83 · see citing works
MutS HOMOLOG1-Derived Epigenetic Breeding Potential in Tomato
Yang, X., Kundariya, H., Xu, Y.-Z., Sandhu, A. P. S., Yu, J., Hutton, S. F., Zhang, M., & Mackenzie, S. A. (2015) · PLANT PHYSIOLOGY · doi:10.1104/pp.15.00075 · Cited by 78 · see citing works
Cao, D., Ju, Z., Gao, C., Mei, X., Fu, D., Zhu, H., Luo, Y., & Zhu, B. (2014) · Gene · doi:10.1016/j.gene.2014.08.034 · Cited by 76 · see citing works
ROS1-Dependent DNA Demethylation Is Required for ABA-Inducible NIC3 Expression
Kim, J., Lim, J. Y., Shin, H., Kim, B., Yoo, S.-D., Kim, W. T., & Huh, J. H. (2019) · PLANT PHYSIOLOGY · doi:10.1104/pp.18.01471 · Cited by 76 · see citing works
Yang, Y., Tang, K., Datsenka, T., Liu, W., Lv, S., Lang, Z., Wang, X., Gao, J., Wang, W., Nie, W., et al. (2019) · Journal of Integrative Plant Biology · doi:10.1111/jipb.12778 · Cited by 75 · see citing works
Self-citationEpigenetic control of defense genes following MeJA-induced priming in rice (O. sativa)
Bertini, L., Proietti, S., Focaracci, F., Sabatini, B., & Caruso, C. (2018) · Journal of Plant Physiology · doi:10.1016/j.jplph.2018.06.007 · Cited by 72 · see citing works
Wang, P., Gao, C., Bian, X., Zhao, S., Zhao, C., Xia, H., Song, H., Hou, L., Wan, S., & Wang, X. (2016) · Frontiers in Plant Science · doi:10.3389/fpls.2016.00007 · Cited by 71 · see citing works
Zhu, C. X., Zhang, S., Zhou, C., Chen, L., Fu, H., Li, X., Lin, Y., Lai, Z., & Guo, Y. (2020) · PeerJ · doi:10.7717/peerj.8432 · Cited by 68 · see citing works
Hydrogen Sulfide in Plants: Crosstalk with Other Signal Molecules in Response to Abiotic Stresses
Wang, C., Deng, Y., Liu, Z., & Liao, W. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms222112068 · Cited by 68 · see citing works
Self-citationLi, Z., Hu, Y., Chang, M., Kashif, M. H., Tang, M., Luo, D., Cao, S., Lu, H., Zhang, W., Huang, Z., et al. (2021) · Chemosphere · doi:10.1016/j.chemosphere.2021.129562 · Cited by 65 · see citing works
Characterization of DNA methyltransferase and demethylase genes in Fragaria vesca
Gu, T., Ren, S., Wang, Y., Han, Y., & Li, Y. (2016) · Molecular Genetics and Genomics · doi:10.1007/s00438-016-1187-y · Cited by 59 · see citing works
Hydrogen gas alleviates postharvest senescence of cut rose ‘Movie star’ by antagonizing ethylene
Wang, C., Fang, H., Gong, T., Zhang, J., Niu, L., Huang, D., Huo, J., & Liao, W. (2019) · Plant Molecular Biology · doi:10.1007/s11103-019-00946-3 · Cited by 57 · see citing works
Self-citationAgeeva-Kieferle, A., Rudolf, E. E., & Lindermayr, C. (2019) · Frontiers in Plant Science · doi:10.3389/fpls.2019.00625 · Cited by 53 · see citing works
Molecular underpinnings of methyl jasmonate‐induced resistance in Norway spruce
Magerøy, M. H., Wilkinson, S. W., Tengs, T., Cross, H., Almvik, M., Pétriacq, P., Vivian‐Smith, A., Zhao, T., Fossdal, C. G., & Krokene, P. (2020) · Plant Cell & Environment · doi:10.1111/pce.13774 · Cited by 51 · see citing works
Overexpression of DEMETER, a DNA demethylase, promotes early apical bud maturation in poplar
Conde, D., Moreno, A., Dervinis, C., Ramos-Sánchez, J. M., Kirst, M., Perales, M., González‐Melendi, P., & Allona, I. (2017) · Plant Cell & Environment · doi:10.1111/pce.13056 · Cited by 48 · see citing works
Roles of DEMETER in regulating DNA methylation in vegetative tissues and pathogen resistance
Zeng, W., Huang, H., Lin, X., Zhu, C., Kosami, K., Huang, C., Zhang, H., Duan, C., Zhu, J., & Miki, D. (2020) · Journal of Integrative Plant Biology · doi:10.1111/jipb.13037 · Cited by 47 · see citing works
Self-citationYu, Z., Zhang, G., da Silva, J. A. T., Li, M., Zhao, C., He, C., Si, C., Zhang, M., & Duan, J. (2021) · BMC Plant Biology · doi:10.1186/s12870-020-02811-8 · Cited by 42 · see citing works
Ai, Y., Jing, S., Cheng, Z., Song, B., Xie, C., Liu, J., & Zhou, J. (2021) · Horticulture Research · doi:10.1038/s41438-021-00619-7 · Cited by 41 · see citing works
DNA methylation is involved in acclimation to iron‐deficiency in rice ( Oryza sativa )
Sun, S., Zhu, J., Guo, R., Whelan, J., & Shou, H. (2021) · The Plant Journal · doi:10.1111/tpj.15318 · Cited by 40 · see citing works
Zanini, D., Todorović, N., Korovljev, D., Štajer, V., Ostojic, J. N., Purać, J. S., Kojić, D. K., Vukašinović, E. L., Djordjievski, S., Sopić, M., et al. (2021) · Experimental Gerontology · doi:10.1016/j.exger.2021.111574 · Cited by 39 · see citing works
Han, M., Yin, J., Zhao, Y., Sun, X.-W., Meng, J., Zhou, J., Shen, T., Li, H., & Zhang, F. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.576054 · Cited by 37 · see citing works
Wang, C., Hou, X., Qi, N., Li, C., Luo, Y., Hu, D., Li, Y., & Liao, W. (2022) · Scientific Reports · doi:10.1038/s41598-022-06810-7 · Cited by 35 · see citing works
Self-citationYu, M., Qin, C., Li, P., Zhang, Y., Wang, Y., Zhang, J., Li, D., Wang, H., Lu, Y., Xie, K., et al. (2021) · International Immunopharmacology · doi:10.1016/j.intimp.2021.107583 · Cited by 34 · see citing works
Ou, X., Zhuang, T., Yin, W., Miao, Y., Wang, B., Zhang, Y., Lin, X., Xu, C., von WETTSTEIN, D., Rustgi, S., et al. (2015) · Plant Molecular Biology Reporter · doi:10.1007/s11105-014-0843-9 · Cited by 33 · see citing works
DNA methylation changes stimulated by drought stress in ABA-deficient maize mutant vp10
Sallam, N., & Moussa, M. (2021) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2021.01.024 · Cited by 33 · see citing works
Azacytidine and miR156 promote rooting in adult but not in juvenile Arabidopsis tissues
Massoumi, M., Krens, F. A., Visser, R. G. F., & de Klerk, G. J. M. (2016) · Journal of Plant Physiology · doi:10.1016/j.jplph.2016.10.010 · Cited by 32 · see citing works
Bennett, M., Cleaves, K., & Hewezi, T. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22189681 · Cited by 31 · see citing works
Guo, Q., Feng, X., Xue, H., Teng, X., Jin, S., Duan, X., Xiao, L., & Wu, Y. (2017) · American Journal of Hypertension · doi:10.1093/ajh/hpx124 · Cited by 29 · see citing works
Methylation in DNA, histone, and RNA during flowering under stress condition: A review
Shi, M., Wang, C., Wang, P., Zhang, M., & Liao, W. (2022) · Plant Science · doi:10.1016/j.plantsci.2022.111431 · Cited by 28 · see citing works
Self-citationMETHYLTRANSFERASE1 and Ripening Modulate Vivipary during Tomato Fruit Development
Yao, M., Chen, W., Kong, J., Zhang, X., Shi, N., Zhong, S., Ma, P., Gallusci, P., Jackson, S. D., Liu, Y., et al. (2020) · PLANT PHYSIOLOGY · doi:10.1104/pp.20.00499 · Cited by 27 · see citing works
Wang, L., Tan, Y. J., Wang, M., Chen, Y. F., & Li, X. Y. (2018) · Reproductive Sciences · doi:10.1177/1933719118815575 · Cited by 23 · see citing works
Transcriptional Regulatory Network of GA Floral Induction Pathway in LA Hybrid Lily
Li, W., Yong, Y., Zhang, Y., & Lyu, Y. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20112694 · Cited by 23 · see citing works
Guo, X., Xie, Q., Li, B., & Su, H. (2019) · Genetics and Molecular Biology · doi:10.1590/1678-4685-gmb-2018-0295 · Cited by 23 · see citing works
Yuan, X., Ma, K., Zhang, M., Wang, J., & Zhang, Q. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.779557 · Cited by 23 · see citing works
Behera, J., Kelly, K. E., & Tyagi, N. (2021) · Journal of Cellular Physiology · doi:10.1002/jcp.30382 · Cited by 21 · see citing works
Browne, L., Mead, A., Horn, C., Chang, K., Celikkol, Z. A., Henriquez, C. L., Ma, F., Beraut, E., Meyer, R. S., & Sork, V. L. (2020) · G3 Genes Genomes Genetics · doi:10.1534/g3.119.400770 · Cited by 19 · see citing works
Liu, H., Wang, C., Li, C., Zhao, Z., Wei, L., Liu, Z., Hu, D., & Liao, W. (2022) · Functional Plant Biology · doi:10.1071/fp21288 · Cited by 17 · see citing works
Self-citationGenome-Wide Identification of DNA Methylases and Demethylases in Kiwifruit (Actinidia chinensis)
Zhang, Y., He, X., Zhao, H., Xu, W., Deng, H., Wang, H., Wang, S., Su, D., Zheng, Z., Yang, B., et al. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.514993 · Cited by 17 · see citing works
Madzima, T. F., Vendramin, S., Lynn, J. S., Lemert, P., Lu, K. C., & McGinnis, K. M. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.694289 · Cited by 11 · see citing works
Read, A. C., Weiss, T. J., Crisp, P. A., Liang, Z., Noshay, J. M., Menard, C. C., Wang, C., Song, M., Hirsch, C. N., Springer, N. M., et al. (2022) · The Plant Journal · doi:10.1111/tpj.15781 · Cited by 10 · see citing works
Self-citationMiljković, D. M., Cvetković, I., Sajic, M., Vuckovic, O., Harhaji-Trajkovic, L. M., Marković, M., & Trajković, V. (2003) · European Journal of Pharmacology · doi:10.1016/j.ejphar.2003.11.057 · Cited by 10 · see citing works
Chowdhury, S., Mukherjee, A., Basak, S., Das, R., Mandal, A., & Kundu, P. (2022) · Planta · doi:10.1007/s00425-022-03985-1 · Cited by 7 · see citing works
Wei, J., Shen, Y., Dong, X., Zhu, Y., Cui, J., Li, H., Zheng, G., Tian, H., Wang, Y., & Liu, Z. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.968494 · Cited by 7 · see citing works
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
Somaclonal Variation and Clonal Fidelity in Commercial Micropropagation: Challenges and Perspectives
Majumder, S., Igamberdiev, A. U., & Debnath, S. C. (2025) · Agronomy · doi:10.3390/agronomy15061489 · Cited by 46 · see citing works
Das, A., Pal, S., Sarkar, A., & Adak, M. K. (2025) · Plant Science · doi:10.1016/j.plantsci.2025.112903 · Cited by 10 · see citing works
Lu, X., Cui, J., Qi, J., Li, S., Yu, W., & Li, C. (2025) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2025.139954 · Cited by 10 · see citing works
Li, C., Yao, Y., Gong, X., Lu, X., Li, S., & Yu, W. (2025) · Horticultural Plant Journal · doi:10.1016/j.hpj.2025.06.015 · Cited by 3 · see citing works
Self-citationZhang, Z., Li, Z., Wang, K., Zhang, Y., Wang, S., Teng, H., Wu, L., Wang, Y., Jiao, F., Zhang, H., et al. (2026) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2026.111468 · Cited by 2 · see citing works
Self-citationZhang, X., Xu, W., Li, M., Cheng, F.-S., Li, Z., Liu, H., Xu, X., Ma, M., & Xie, F.-W. (2026) · Plant physiology and biochemistry : PPB · doi:10.1016/j.plaphy.2026.111018 · Cited by 1 · see citing works
Zhang, Y., Munawar, A., Chen, X., Yang, S., Zhang, Y., Mao, Z., Zhu, Z., Xu, S., & Zhou, W. (2026) · Pest Management Science · doi:10.1002/ps.70636
Chu, L., Li, M., Rong, L., Mo, Z. O. U., Xu, N., & Sun, X. (2026) · Algal Research · doi:10.1016/j.algal.2026.104842
Ensuring Clonal Fidelity and Quality Assurance in Woody Plant Micropropagation
Kaçar, Y. A., Şimşek, Ö., Dönmez, D., Isak, M. A., & Hazubska-Przybył, T. (2026) · Springer eBooks · doi:10.1007/978-3-032-28071-8_15
- Authors
- Liu, Z., Liu, C., Wang, C., Pan, X., Zhang, H., Yao, Y., Huang, D., & Liao, W.
- Affiliations
- Gansu Agricultural University (CN)
- Corresponding author
- Liao, Weibiao
- Venue
- Journal of Plant Growth Regulation
- Published
- 2023-12-08
- Volume
- 43
- Issue
- 4
- Pages
- 1287-1303
- ISSN
- 0721-7595 (ISSN-L)
- 1435-8107
- OpenAlex
- W4389487913
- Cited by
- 9
- References
- 68
- Citations by year
- 2026: 5 · 2025: 4
- FWCI
- 0.80
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- Journal of Plant Growth Regulation (publishedVersion)
- Funders
- the National Key Research and Development Program of China (2018YFD1000800)
- National Natural Science Foundation of China (32072559, 31860568, 31560563, 31160398, 32102370)
- the Natural Science Foundation of Gansu Province, China (20JR5RA027, 1606RJZA073, 1606RJZA077, 1606RJYA252)
- the Fuxi Young Talents Fund of Gansu Agricultural University (Gaufx-03Y07)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Seed Germination and Physiology
- Keywords
- DNA methylation, tomato seedlings, plant growth regulators, decitabine, abscisic acid, methyl jasmonate, gibberellic acid, nitric oxide, hydrogen sulfide, molecular hydrogen, DNA methyltransferases, DNA demethylase
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review