A novel rule-based algorithm for assigning myocardial fiber orientation to computational heart models.
Open accessAbstract
Electrical waves traveling throughout the myocardium elicit muscle contractions responsible for pumping blood throughout the body. The shape and direction of these waves depend on the spatial arrangement of ventricular myocytes, termed fiber orientation. In computational studies simulating electrical wave propagation or mechanical contraction in the heart, accurately representing fiber orientation is critical so that model predictions corroborate with experimental data. Typically, fiber orientation is assigned to heart models based on Diffusion Tensor Imaging (DTI) data, yet few alternative methodologies exist if DTI data is noisy or absent. Here we present a novel Laplace-Dirichlet Rule-Based (LDRB) algorithm to perform this task with speed, precision, and high usability. We demonstrate the application of the LDRB algorithm in an image-based computational model of the canine ventricles. Simulations of electrical activation in this model are compared to those in the same geometrical model but with DTI-derived fiber orientation. The results demonstrate that activation patterns from simulations with LDRB and DTI-derived fiber orientations are nearly indistinguishable, with relative differences ≤6%, absolute mean differences in activation times ≤3.15 ms, and positive correlations ≥0.99. These results convincingly show that the LDRB algorithm is a robust alternative to DTI for assigning fiber orientation to computational heart models.
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When imaging data is noisy, an alternative rule-based methodology can be utilized to simulate electrical wave propagation and mechanical contraction in the heart.
“However, when imaging data is noisy, an alternative rule-based methodology can be utilized to simulate electrical wave propagation and mechanical contraction in the heart (Bayer et al., 2012; Lopez-Perez et al., 2015; Nguyen et al., 2020).”
From Thoroughly Calibrated Modular Agent-Based Model of the Human Cardiovascular and Renal Systems for Blood Pressure Regulation in Health and Disease (2021) · cites this paper as Bayer et al., 2012
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- [1]Alexander AL Hasan KM Lazar M Tsuruda JS Parker DL Analysis of partial volume effects in diffusion-tensor MRI Magn. Reson. Med 2001 45 5 770 780 11323803
- [2]Ashikaga H Criscione JC Omens JH Covell JW Ingels NB Transmural left ventricular mechanics underlying torsional recoil during relaxation Am. J. Physiol. Heart Circ. Physiol 2004 286 2 H640 H647 14551052 PMC2954110
- [3]Bayer JD Beaumont J Krol A Laplace–Dirichlet energy field specification for deformable models. An FEM approach to active contour fitting Ann. Biomed. Eng 2005 33 9 1175 1186 16133925
- [4]Beyar R Sideman S A computer study of the left ventricular performance based on fiber structure, sarcomere dynamics, and transmural electrical propagation velocity Circ. Res 1984 55 3 358 375 6467528
- [5]Bishop MJ Boyle PM Plank G Welsh DG Vigmond EJ Modeling the role of the coronary vasculature during external field stimulation IEEE Trans. Biomed. Eng 2010 57 10 2335 2345 20542762 PMC2976591
- [6]Bishop MJ Plank G Burton RA Schneider JE Gavaghan DJ Grau V Kohl P Development of an anatomically detailed MRI-derived rabbit ventricular model and assessment of its impact on simulations of electrophysiological function Am. J. Physiol. Heart. Circ. Physiol 2010 298 2 H699 H718 19933417 PMC2822578
- [7]Bovendeerd PH Arts T Huyghe JM van Campen DH Reneman RS Dependence of local left ventricular wall mechanics on myocardial fiber orientation: a model study J. Biomech 1992 25 10 1129 1140 1400513
- [8]Caldwell BJ Trew ML Sands GB Hooks DA LeGrice IJ Smaill BH Three distinct directions of intramural activation reveal nonuniform side-to-side electrical coupling of ventricular myocytes Circ. Arrhythm. Electrophysiol 2009 2 4 433 440 19808500
- [9]Cherry EM Greenside HS Henriquez CS Efficient simulation of three-dimensional anisotropic cardiac tissue using an adaptive mesh refinement method Choas 2003 13 3 853 865 12946177
- [10]Costa KD Takayama Y McCulloch AD W J Laminar fiber architecture and three-dimensional systolic mechanics in canine ventricular myocardium Am. J. Physiol 1999 276 2 Pt 2 H595 H607 9950861
- [11]Fernandez-Teran MA Hurle JM Myocardial fiber architecture of the human heart ventricles Anat. Rec 1982 204 2 137 147 7181130
- [12]Greenstein JL Winslow RL An integrative model of the cardiac ventricular myocyte incorporating local control of Ca2+ release Biophys. J 2002 83 6 2918 2945 12496068 PMC1201479
- [13]Han C Pogwizd SM Killingsworth CR He B Noninvasive reconstruction of the three-dimensional ventricular activation sequence during pacing and ventricular tachycardia in the canine heart Am. J. Physiol. Heart Circ. Physiol 2012 302 1 H244 H252 21984548 PMC3334244
- [14]Harrington KB Rodriguez F Cheng A Langer F Ashikaga H Daughters GT Criscione JC Ingels NB Miller DC Direct measurement of transmural laminar architecture in the anterolateral wall of the ovine left ventricle: new implications for wall thickening mechanics Am. J. Physiol. Heart Circ. Physiol 2005 288 3 H1324 H1330 15550521 PMC2822837
- [15]Helm P Beg MF Miller MI Winslow RL Measuring and mapping cardiac fiber and laminar architecture using diffusion tensor MR imaging Ann. N. Y. Acad. Sci 2005 1047 296 307 16093505
- [16]Helm PA Younes L Beg MF Ennis DB Leclercq C Faris OP McVeigh E Kass D Miller MI Winslow RL Evidence of structural remodeling in the dyssynchronous failing heart Circ. Res 2006 98 1 125 132 16339482
- [17]Hristov N Liakopoulos OJ Buckberg GD Trummer G Septal structure and function relationships parallel the left ventricular free wall ascending and descending segments of the helical heart Eur. J. Cardiothorac. Surg 2006 29S S115 S125 16564184
- [18]Hooks DA Trew ML Caldwell BJ Sands GB LeGrice IJ Smaill BH Laminar arrangement of ventricular myocytes influences electrical behavior of the heart Circ. Res 2007 101 10 e103 e112 17947797
- [19]Hsu EW Muzikant AL Matulevicius SA Penland RC Henriquez CS Magnetic resonance myocardial fiber-orientation mapping with direct histological correlation Am. J. Physiol 1998 274 5 Pt 2 H1627 H1634 9612373
- [20]Keller DUJ Weiss DL Dossel O Seemann G Influence of IKs heterogeneities on the genesis of the T-wave: a computational evaluation IEEE Trans. Biomed. Eng 2012 59 2 311 322 21926009
- [21]Kim YH Xie F Yashima M Wu TJ Valderrbano M Lee MH Ohara T Voroshilovsky O Doshi RN Fishbein MC Qu Z Garfinkel A Weiss JN Karagueuzian HS Chen PS Role of papillary muscle in the generation and maintenance of reentry during ventricular tachycardia and fibrillation in isolated swine right ventricle Circulation 1999 100 13 1450 1459 10500048
- [22]LeGrice IJ Smaill BH Chai LZ Edgar SG Gavin JB Hunter PJ Laminar structure of the heart: Ventricular myocyte arrangement and connective tissue architecture in the dog Am. J. Physiol 1995 269 2 Pt 2 H571 H582 7653621
- [23]Lombaert H Peyrat J-M Croisille P Rapacchi S Fanton L Clarysse P Delingette H Ayache N Statistical analysis of the human cardiac fiber architecture from DT-MRI 2011 Proceedings of the 6th International Conference on Functional Imaging and Modeling of the Heart (FIMH’11) 171 179
- [24]Pierpaoli C Basser PJ Toward a quantitative assessment of diffusion anisotropy Magn. Reson. Med 1996 36 6 893 906 8946355
- [25]Potse M Dub B Richer J Vinet A Gulrajani RM A comparison of monodomain and bidomain reaction-diffusion models for action potential propagation in the human heart IEEE Trans. Biomed. Eng 2006 53 12 Pt 1 2425 2435 17153199
- [26]Reddy JN An Introduction to the Finite Element Method 2006 3rd ed. New York McGraw-Hill 766
- [27]Rijcken J Bovendeerd PH Schoofs AJ van Campen DH Arts T Optimization of cardiac fiber orientation for homogeneous fiber strain during ejection Ann. Biomed. Eng 1999 27 3 289 297 10374722
- [28]Roberts DE Hersh LT Scher AM Influence of cardiac fiber orientation on wavefront voltage, conduction velocity, and tissue resistivity in the dog Circ. Res 1979 44 5 701 712 428066
- [29]Rohmer D Sitek A Gullberg GT Reconstruction and visualization of fiber and laminar structure in the normal human heart from ex vivo diffusion tensor magnetic resonance imaging (DTMRI) data Invest. Radiol 2007 42 11 777 789 18030201
- [30]Scollan DF Holmes A Winslow R Forder J Histological validation of myocardial microstructure obtained from diffusion tensor magnetic resonance imaging Am. J. Physiol 1998 275 6 Pt 2 H2308 H2318 9843833
- [31]Scollan DF Holmes A Zhang J Winslow RL Reconstruction of cardiac ventricular geometry and fiber orientation using magnetic resonance imaging Ann. Biomed. Eng 2000 28 8 934 944 11144678 PMC1473035
- [32]Streeter DD Spotnitz HM Patel DP Ross J Sonnenblick EH Fiber orientation in the canine left ventricle during diastole and systole Circ. Res 1969 24 3 339 347 5766515
- [33]Trayanova NA Whole-heart modeling: applications to cardiac electrophysiology and electro mechanics Circ. Res 2011 108 1 113 128 21212393 PMC3031963
- [34]Vadakkumpadan F Arevalo H Prassl AJ Chen J Kickinger F Kohl P Plank G Trayanova N Image-based models of cardiac structure in health and disease Wiley Interdiscip. Rev. Syst. Biol. Med 2010 2 4 489 506 20582162 PMC2889712
- [35]Vendelin M Bovendeerd PH Engelbrecht J Arts T Optimizing ventricular fibers: uniform strain or stress, but not ATP consumption, leads to high efficiency Am. J. Physiol. Heart Circ. Physiol 2002 283 3 H1072 H1081 12181137
- [36]Vetter FJ Simons SB Mironov S Hyatt CJ Pertsov AM Epicardial fiber organization in swine right ventricle and its impact on propagation Circ. Res 2005 96 2 244 251 15618536
- [37]Vigmond EJ Weber dos Santos R Prassl AJ Deo M Plank G Solvers for the cardiac bidomain equations Prog. Biophys. Mol. Biol 2008 96 1–3 3 18 17900668 PMC2881536
- [38]Weiss DL Seemann G Keller DUJ Farina D Sachse FB Dossel O Modeling of heterogeneous electrophysiology in the human heart with respect to ECG genesis In Proceedings of Computers in Cardiology 2007 49 52
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- Authors
- Bayer, J. D., Blake, R. C., Plank, G., & Trayanova, N. A.
- Affiliations
- Johns Hopkins University (US)
- Medical University of Graz (AT)
- Corresponding author
- Bayer, J. D.
- Venue
- Annals of Biomedical Engineering
- Published
- 2012-05-31
- Volume
- 40
- Issue
- 10
- Pages
- 2243-2254
- ISSN
- 0090-6964 (ISSN-L)
- 1573-9686
- PMC
- PMC3518842
- OpenAlex
- W2132670047
- Cited by
- 557
- References
- 0
- Citations by year
- 2026: 47 · 2025: 54 · 2024: 45 · 2023: 61 · 2022: 59 · 2021: 59 · 2020: 49 · 2019: 47 · 2018: 35 · 2017: 24 · 2016: 23 · 2015: 24 · 2014: 14 · 2013: 14 · 2012: 1
- FWCI
- 10.91
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Annals of Biomedical Engineering (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Science Foundation
- American Heart Association
- Austrian Science Fund
- Université de Bordeaux
- National Institutes of Health
- National Heart, Lung, and Blood Institute (R01HL103428, R01 HL10119601, R01HL101196, R01HL105216, HL103428, R01HL082729)
- Division of Chemical, Bioengineering, Environmental, and Transport Systems
- Topics
- Health Sciences › Medicine › Cardiology and Cardiovascular Medicine › Cardiac electrophysiology and arrhythmias
- Health Sciences › Medicine › Cardiology and Cardiovascular Medicine › Cardiac Arrhythmias and Treatments
- Health Sciences › Medicine › Cardiology and Cardiovascular Medicine › Cardiac pacing and defibrillation studies
- Keywords
- myocardial fiber orientation, rule-based algorithm, electrical wave propagation, ventricular myocytes, canine ventricle
- MeSH terms
- Algorithms, Animals, Computer Simulation, Dogs, Humans, Image Processing, Computer-Assisted, Models, Cardiovascular, Myocardium, Myofibrils, Radiography, Diffusion Tensor Imaging
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