CoChat
Sign Up
Cited by 26

The DOI matches its Crossref record.

Characterization of fluoride-tolerant halophilic Bacillus flexus NM25 (HQ875778) isolated from fluoride affected soil in Birbhum District, West Bengal, India

Pal, Kartick Chandra, Mondal, Naba Kumar, Chatterjee, Soumendranath, Ghosh, Tuhin Subhra, Datta, Jayanta Kumar·2014·Environmental Monitoring and Assessment
DOI 10.1007/s10661-013-3408-8
Open this paper in CoChat — free account

Abstract

A new Gram-positive, nonpigmented, rod-shaped fluoride-tolerant bacterial strain, NM25, was isolated from waterlogged muddy field soil collected from the fluoride endemic area of Rampurhat II block (average fluoride in water, 4.7 mg/l, and in soil, 1.5 mg/kg) in Birbhum District, West Bengal, India. The study was undertaken to characterize the fluoride-tolerant bacterial isolate, to determine its role in bioaccumulation of fluoride, and to analyze the water and soil quality of the bacterial environment. The isolate was positive for catalase, lipase, urease, protease, oxidase, and H2S production, but negative for indole production, nitrate reduction, and Vogues-Proskauer test. The organisms were sensitive to recommended doses of ofloxacin, kanamycin, rifampicin, levofloxacin, vancomycin, gatifloxacin, gentamicin, doxycycline, streptomycin, and nalidixic acid but resistant to ampicillin. Based on the phenotypic characteristics, 16S rRNA gene sequence, and phylogenetic analysis, the bacterial isolate NM25 was identified as Bacillus flexus. The G+C content of the 16S rDNA was 53.14 mol%. This strain tolerated up to 20% (w/v) NaCl in nutrient agar medium and was grown at the pH range 4-12. It reduced fluoride concentration up to 67.45% and tolerated more than 1,500 ppm of fluoride in brain-heart infusion agar medium.

Overview

Integrity signals

Registry

Crossref · 10.1007/s10661-013-3408-8

Cites

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Citations

Cites

No references could be resolved yet.

Research works printed but not linked: 52

  1. Aber, J. D. (1992). Nitrogen cycling and nitrogen saturation in temperate forest ecosystems. Trends in Ecology & Evolution, 7, 220–223. · DOI
  2. American Public Health Association (APHA). (2005). Standard methods for the examination of water and wastewater (21st ed.). Washington DC: APHA.
  3. Arnesen, A. M. K. (1997). Effect of fluoride pollution on pH and solubility of Al, Fe, Ca, Mg, K and organic matter in soil from Årdal (Western Norway). Water, Air, & Soil Pollution, 103, 375–388. · DOI
  4. Arveti, N., Sarma, M. R. S., Aitkenhead-Peterson, J. A., & Sunil, K. (2011). Fluoride incidence in groundwater: a case study from Talupula, Andhra Pradesh, India. Environmental Monitoring and Assessment, 172, 427–443. · DOI
  5. Asmar, F., Eiland, F., & Nielson, N. E. (1994). Effect of extracellular-enzyme activities on solubilization rate of soil organic nitrogen. Biology and Fertility of Soils, 17, 32–38. · DOI
  6. Beighton, D., & McDougll, W. A. (1977). The effects of fluoride on the percentage bacterial composition of dental plaque, of carries incidence, and on the in vitro growth of Streptococcus mutants, Actinomyces viscous, and Actinobacillus sp. Journal of Dental Research, 56, 1185–1191. · DOI
  7. Brettar, I., Christen, R., & Höfle, M. G. (2002). Rheinheimera baltica gen. nov., sp. nov., a blue-colored bacterium isolated from the central Baltic Sea. International Journal of Systematic and Evolutionary Microbiology, 52, 1851–1857. · DOI
  8. Brewer, R. F. (1965). Fluorine. In C. A. Black (Ed.), Methods of soil analysis. Part 2. Agronomy monograph. Madison: ASA and SSSA.
  9. Brindha, K., Rajesh, R., Murugan, R., & Elango, L. (2011). Fluoride contamination in groundwater in parts of Nalgonda District, Andhra Pradesh, India. Environmental Monitoring and Assessment, 172, 481–492. · DOI
  10. Brown, A. E. (2007). Benson’s microbiological applications: laboratory manual in general microbiology, short version (10th ed.). Boston: McGrawHill. pp. 450.
  11. Chouhan, S., Tuteja, U., & Flora, S. J. S. (2012). Isolation, identification and characterization of fluoride resistant bacteria: possible role in bioremediation. Applied Biochemistry and Microbiology, 48(1), 43–50. · DOI · Paper page
  12. Claus, D., & Berkeley, R. C. W. (1986). Genus Bacillus Cohn 1872. In P. H. A. Sneath, N. S. Mair, M. E. Sharpe, & J. G. Holt (Eds.), Bergey’s manual of systematic bacteriology (Vol. 2, pp. 1105–1139). Baltimore: Williams and Wilkins.
  13. Edun, O. M., & Efiuvwevwere, B. J. O. (2012). Bacterial profiles and physico-chemical parameters of water samples from different sites of the New Calabar River, Nigeria. Sustainable Agriculture Research, 1(2), 162–169. · DOI
  14. Eren, E., Ozturk, M., Mumcu, E. F., & Canatan, D. (2005). Fluorosis and its hematological effects. Toxicology and Industrial Health, 21(10), 255–258. · DOI · Paper page
  15. Farrah, H., Slavek, J., & Pickering, W. F. (1987). Fluoride interactions with hydrous aluminium oxides and alumina. Australian Journal of Soil Research, 25(1), 55–69. · DOI
  16. García, C. T., Hernández, T., Costa, F., Ceccanti, B., & Ganni, A. (1993). Hydrolases in the organic matter fractions of sewage sludge, changes with composting. Bioresource Technology, 45, 44–52. · DOI
  17. Gautam, R., & Bhardwaj, N. (2010). Groundwater quality assessment of Nawa Tehsil in Nagaur District (Rajasthan) with special reference to fluoride. Environmentalist, 30, 219–227. · DOI
  18. Head, I. M., Jones, D. M., & Larter, S. M. (2003). Biological activity in the deep subsurface and the origin of heavy oil. Nature, 426, 334–351. · DOI
  19. Hedley, M.J., Loganathan, P., Grace, N.D. (2007). Fertilizer-derived fluorine in grazed pasture systems. Australian Fertilizer Industry Conference.
  20. Hutchens, E., Valsami-Jones, E., Harouiya, N., Chaïrat, C., Oelkers, E. H., & McEldoney, S. (2006). An experimental investigation of the effect of Bacillus megaterium on apatite dissolution. Geomicrobiology Journal, 23(3–4), 177–182. · DOI
  21. Johnna, P. F., Richards, G. P., & Ozbay, G. (2012). Water-quality parameters and total aerobic bacterial and Vibrionaceae loads in eastern oysters (Crassostrea virginica) from oyster-gardening sites. Archives of Environmental Contamination and Toxicology, 62, 628–637. · DOI
  22. Jukes, T. H., & Cantor, C. R. (1969). Evolution of protein molecules. In H. N. Munro (Ed.), Mammalian protein metabolism (pp. 21–132). New York: Academic. · DOI · Paper page
  23. Kandeler, E., & Gerber, H. (1988). Short-term assay of soil urease activity using colorimetric determination of ammonium. Biology and Fertility of Soils, 6, 68–72. · DOI
  24. Kaye, J. P., & Hart, S. C. (1997). Competition for nitrogen between plants and soil microorganisms. Trends in Ecology & Evolution, 12, 139–142. · DOI
  25. Kim, K. S., Cui, C., & Cho, S. J. (1998). Novel amphi-ionophores. The Journal of Physical Chemistry. B, 102(2), 461–463. · DOI
  26. Lacey, L. A. (1997). Manual of techniques in insect pathology (p. 409). New York: Academic.
  27. Lauber, C. L., Strickland, M. S., Bradford, M. A., & Fierer, N. (2008). The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biology & Biochemistry, 40, 2407–2415. · DOI
  28. Lou, M., & Golding, G. B. (2007). FINGERPRINT: visual depiction of variation in multiple sequence alignments. Molecular Ecology Notes, 7, 908–914. · DOI
  29. McGarity, J. W., & Meyers, M. G. (1967). A survey of urease activity in soils of northern New South Wales. Plant and Soil, 27, 217–238. · DOI
  30. Mishra, P. C., Mohanty, R. K., & Dash, M. C. (1979). Enzyme activity in subtropical surface soils under pasture. Indian Journal of Agricultural Chemistry, 12, 19–24.
  31. Mondal, N. K., Pal, K. C., & Kabi, S. (2012). Prevalence and severity of dental fluorosis in relation to fluoride in ground water in the villages of Birbhum District, West Bengal, India. Environmentalist, 3, 70–84. · DOI
  32. Nelson, D. W., & Sommers, L. E. (1980). Total nitrogen analysis of soil and plant tissues. Journal - Association of Official Analytical Chemists, 63, 770–778.
  33. Pelczar, M. J., Bard, R. C., Burnett, G. W., Conn, H. J., Demoss, R. D., Euans, E. E., et al. (1957). Manual of microbiological methods. Society of American Bacteriology (p. 315). New York: McGraw Hill Book Company, Inc.
  34. Poulsen, R. (2011) The effect of fluoride pollution on soil microorganisms. Bachelor thesis, Faculty of Physical Sciences, University of Iceland. pp. 42
  35. Ratkowsky, D. A., Olley, J., Mcmeekin, T. A., & Ball, A. (1982). Relationship between temperature and growth rate of bacterial cultures. Journal of Bacteriology, 149(1), 1–5. · DOI
  36. Saitou, N., & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406–425.
  37. Salve, P. R., Maurya, A., Kumbhare, P. S., Ramteke, D. S., & Wate, S. R. (2008). Assessment of groundwater quality with respect to fluoride. Bulletin of Environmental Contamination and Toxicology, 8, 289–293. · DOI
  38. Saxena, V. K., & Ahmed, S. (2003). Inferring the chemical parameters for the dissolution of fluoride in groundwater. Environmental Geology, 43, 731–736. · DOI
  39. Schinner, F., Öhlinger, R., Kandeler, E., & Margesin, R. (1996). Methods in soil biology, Springer lab manual (p. 426). Berlin: Springer. · DOI
  40. Silver, S., & Phung, L. T. (1996). Bacterial heavy metal resistance: new surprises. Annual Review of Microbiology, 50, 753–789. · DOI
  41. Sinsabaugh, R. L., Antibus, R. K., Linkins, A. E., McClaugherty, C. A., Rayburn, L., Repert, D., et al. (1993). Wood decomposition: nitrogen and phosphorus dynamics in relation to extracellular enzyme activity. Ecology, 74(5), 1586–1593. · DOI
  42. Sneath, P. H. A., Mair, N. S., Sharpe, M. E., & Hotts, J. G. (1986). Bergey’s manual of systematic bacteriology (vol. 2). Baltimore: Williams and Wilkins.
  43. Sundareshwar, P. V., Morris, J. T., Koepfler, E. K., & Formwalt, B. (2003). Phosphorus limitation of coastal ecosystem processes. Science, 299, 563–565. · DOI
  44. Sutton, R. W., Bender, G. R., & Marquis, R. E. (1987). Fluoride inhibition of proton-translocating ATPases of oral bacteria. Infection and Immunity, 55(11), 2597–2603. · DOI · Paper page
  45. Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994). ClustalW—improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22(22), 4673–4680. · DOI · Paper page
  46. Tscherko, D., & Kandeler, E. (1997). Ecotoxicological effects of fluorine deposits on microbial biomass and enzyme activities in grasslands. European Journal of Soil Science, 48(2), 329–335. · DOI
  47. United States Public Health Service (USPHS). (1961). Drinking water standards. Journal of American Water Works Association, 53(8), 935–945. · DOI
  48. Ventosa, A., Nieto, J. J., & Oren, A. (1998). Biology of moderately halophilic aerobic bacteria. Microbiology and Molecular Biology Reviews, 62(2), 504–544. · DOI
  49. Walkley, A., & Black, J. A. (1934). An examination of the Detjareff method for determining soil organic matter and a proposed modification of the chromatic acid titration method. Soil Science, 37, 29–38. · DOI
  50. World Health Organization (WHO). (1997). Guidelines for drinking water quality (2nd edn.). Volume 3: surveillance and control of community supplies (p. 113). Geneva: WHO.
  51. Yan, F., McBratney, A. B., & Copeland, L. (2000). Functional substrate biodiversity of cultivated and uncultivated a horizons of vertisols in NW New south Wales. Geoderma, 96, 321–343. · DOI
  52. Zhong, W. H., & Cai, Z. C. (2007). Long-term effects of inorganic fertilizers on microbial biomass and community functional diversity in a paddy soil derived from quaternary red clay. Applied Soil Ecology, 36, 84–91. · DOI

Cited by

Sorted by citations

Metadata

Authors
Pal, K. C., Mondal, N. K., Chatterjee, S., Ghosh, T. S., & Datta, J. K.
Venue
Environmental Monitoring and Assessment
Publisher
Springer Science and Business Media LLC
Published
2013-09-26
Volume
186
Issue
2
Pages
699-709
ISSN
  • 0167-6369
  • 1573-2959
DOI
10.1007/s10661-013-3408-8
Cited by
26
References
0
Language
en
Licence
www.springer.com/tdm (tdm)

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review