The DOI matches its Crossref record; 29 of the 29 references it cites were found in a registry or an index.
Influence of proline residues on protein conformation
Abstract
To study the influence of proline residues on three-dimensional structure, an analysis has been made of all proline residues and their local conformations extracted from the Brookhaven Protein Data bank. We have considered the conformation of the proline itself, the relative occurrence of cis and trans peptides preceding proline residues, the influence of proline on the conformation of the preceding residue and the conformations of various proline patterns (Pro-Pro, Pro-X-Pro, etc.). The results highlight the unique role of proline in determining local conformation.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“a very finely balanced energy difference with about only one in 15 prolines in protein structures adopting the cis form50.”
From Critical assessment of methods of protein structure prediction (CASP)—Round XIV (2021) · cites this paper as [50]
Citations
Cites
Kabsch, W., & Sander, C. (1983) · Biopolymers · doi:10.1002/bip.360221211 · Cited by 15,320
The protein data bank: A computer-based archival file for macromolecular structures
Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F., Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T., & Tasumi, M. (1977) · Journal of Molecular Biology · doi:10.1016/s0022-2836(77)80200-3 · Cited by 8,574
The Anatomy and Taxonomy of Protein Structure
Richardson, J. S. (1981) · Advances in protein chemistry · doi:10.1016/s0065-3233(08)60520-3 · Cited by 3,378
Chou, P. Y., & Fasman, G. D. (1974) · Biochemistry · doi:10.1021/bi00699a001 · Cited by 2,172
A graphics model building and refinement system for macromolecules
Jones, T. A. (1978) · Journal of Applied Crystallography · doi:10.1107/s0021889878013308 · Cited by 1,833
Amino Acid Preferences for Specific Locations at the Ends of α Helices
Richardson, J. S., & Richardson, D. C. (1988) · Science · doi:10.1126/science.3381086 · Cited by 1,364
Brandts, J. F., Halvorson, H. R., & Brennan, M. (1975) · Biochemistry · doi:10.1021/bi00693a026 · Cited by 1,116
Barlow, D. J., & Thornton, J. M. (1988) · Journal of Molecular Biology · doi:10.1016/0022-2836(88)90641-9 · Cited by 1,064
Self-citationAnalysis and prediction of the different types of β-turn in proteins
Wilmot, C. M., & Thornton, J. M. (1988) · Journal of Molecular Biology · doi:10.1016/0022-2836(88)90103-9 · Cited by 985
Self-citationFolding of immunogenic peptide fragments of proteins in water solution
Dyson, H. J., Rance, M., Houghten, R. A., Lerner, R. A., & Wright, P. E. (1988) · Journal of Molecular Biology · doi:10.1016/0022-2836(88)90446-9 · Cited by 737
Research works printed but not linked: 2
- Brandl, 1986, 83, 917
- Efimov, 1981, Mol. Biol. (Moscow), 20, 250
Cited by
Sorted by citations
Ballesteros, J. A., & Weinstein, H. (1995) · Methods in neurosciences · doi:10.1016/s1043-9471(05)80049-7 · Cited by 3,001
Stereochemical quality of protein structure coordinates
Morris, A. L., MacArthur, M. W., Hutchinson, E. G., & Thornton, J. M. (1992) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.340120407 · Cited by 1,568
Self-citationThe Rosetta All-Atom Energy Function for Macromolecular Modeling and Design
Alford, R. F., Leaver-Fay, A., Jeliazkov, J. R., O’Meara, M. J., DiMaio, F. P., Park, H., Shapovalov, M. V., Renfrew, P. D., Mulligan, V. K., Kappel, K., et al. (2017) · Journal of Chemical Theory and Computation · doi:10.1021/acs.jctc.7b00125 · Cited by 1,532
Kay, B. K., Williamson, M. P., & Sudol, M. (2000) · The FASEB Journal · doi:10.1096/fasebj.14.2.231 · Cited by 1,214
Cis−Trans Isomerization of Organic Molecules and Biomolecules: Implications and Applications
Dugave, C., & Demange, L. (2003) · Chemical Reviews · doi:10.1021/cr0104375 · Cited by 1,033
Metadata
- Authors
- MacArthur, M. W., & Thornton, J. M.
- Affiliations
- University College London (GB)
- ORCID
- Thornton, Janet M.
- Venue
- Journal of Molecular Biology
- Publisher
- Elsevier BV
- Published
- 1991-03
- Volume
- 218
- Issue
- 2
- Pages
- 397-412
- ISSN
- 0022-2836 (ISSN-L)
- OpenAlex
- W2047572594
- Cited by
- 1,189
- References
- 29
- Citations by year
- 2026: 32 · 2025: 34 · 2024: 34 · 2023: 21 · 2022: 32 · 2021: 36 · 2020: 33 · 2019: 35 · 2018: 31 · 2017: 27 · 2016: 37 · 2015: 37 · 2014: 32 · 2013: 45 · 2012: 35
- FWCI
- 10.97
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Journal of Molecular Biology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Physical Sciences › Chemistry › Organic Chemistry › Chemical Synthesis and Analysis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
- Keywords
- proline residues, protein conformation, local conformation, cis-trans isomerization, peptide backbone conformation, protein structure, Protein Data Bank
- MeSH terms
- Amino Acid Sequence, Crystallization, Glycine, Hydrogen Bonding, Molecular Sequence Data, Proline, Protein Conformation, Databases, Factual
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
