CoChat
Sign Up
Cited by 6

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

The Simplest Eyes

Spudich, John L., Spudich, Elena N.·2008·Animal Models in Eye Research
DOI 10.1016/b978-0-12-374169-1.00002-3
Open this paper in CoChat — free account

Overview

Integrity signals

Registry

Crossref · 10.1016/b978-0-12-374169-1.00002-3

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

We couldn’t retrieve this paper’s full text, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Citations

Cites

Research works printed but not linked: 72

  1. Arnis, 1993, Two different forms of metarhodopsin II: schiff base deprotonation precedes proton uptake and signaling state, P Natl Acad Sci USA, 90, 7849, 10.1073/pnas.90.16.7849 · DOI
  2. Baker, 2006, Systems biology of bacterial chemotaxis, Curr Opin Microbiol, 9, 187, 10.1016/j.mib.2006.02.007 · DOI
  3. Béjà, 2001, Proteorhodopsin phototrophy in the ocean, Nature, 411, 786, 10.1038/35081051 · DOI
  4. Bennett, 1982, Light-induced interaction between rhodopsin and the GTP-binding protein Metarhodopsin II is the major photoproduct involved., Eur J Biochem, 127, 97, 10.1111/j.1432-1033.1982.tb06842.x · DOI
  5. Bergo, 2005, Photoactivation perturbs the membrane-embedded contacts between sensory rhodopsin II and its transducer, J Biol Chem, 280, 28365, 10.1074/jbc.M505555200 · DOI
  6. Bi, 2006, Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration, Neuron, 50, 23, 10.1016/j.neuron.2006.02.026 · DOI
  7. Bieszke, 1999, A eukaryotic protein, NOP-1, binds retinal to form an archaeal rhodopsin-like photochemically reactive pigment, Biochemistry, 38, 14138, 10.1021/bi9916170 · DOI
  8. Bogomolni, 1982, Identification of a third rhodopsin-like pigment in phototactic Halobacterium halobium, P Natl Acad Sci USA, 79, 6250, 10.1073/pnas.79.20.6250 · DOI
  9. Bordignon, 2005, Structural analysis of a HAMP domain: the linker region of the phototransducer in complex with sensory rhodopsin II, J Biol Chem, 280, 38767, 10.1074/jbc.M509391200 · DOI
  10. Dieckmann, 2003, Eyespot placement and assembly in the green alga Chlamydomonas, BioEssays, 25, 410, 10.1002/bies.10259 · DOI
  11. Essen, 1998, Lipid patches in membrane protein oligomers: crystal structure of the bacteriorhodopsin–lipid complex, P Natl Acad Sci USA, 95, 11673, 10.1073/pnas.95.20.11673 · DOI
  12. Falke, 2001, Transmembrane signaling in bacterial chemoreceptors, Trends Biochem Sci, 26, 257, 10.1016/S0968-0004(00)01770-9 · DOI
  13. Foster, 1980, Light antennas in phototactic algae, Microbiol Rev, 44, 572, 10.1128/MMBR.44.4.572-630.1980 · DOI
  14. Frigaard, 2006, Proteorhodopsin lateral gene transfer between marine planktonic bacteria and archaea, Nature, 439, 847, 10.1038/nature04435 · DOI
  15. Gordeliy, 2002, Molecular basis of transmembrane signalling by sensory rhodopsin II-transducer complex, Nature, 419, 484, 10.1038/nature01109 · DOI
  16. Govorunova, 2004, Chlamydomonas sensory rhodopsins A and B: cellular content and role in photophobic responses, Biophys J, 86, 2342, 10.1016/S0006-3495(04)74291-5 · DOI
  17. Grigorieff, 1996, Electron-crystallographic refinement of the structure of bacteriorhodopsin, J Mol Biol, 259, 393, 10.1006/jmbi.1996.0328 · DOI
  18. Hegemann, 1997, Vision in microalgae, Planta, 203, 265, 10.1007/s004250050191 · DOI
  19. Hippler-Mreyen, 2003, Probing the sensory rhodopsin II binding domain of its cognate transducer by calorimetry and electrophysiology, J Mol Biol, 330, 1203, 10.1016/S0022-2836(03)00656-9 · DOI
  20. Hoff, 1997, Molecular mechanism of photosignaling by archaeal sensory rhodopsins, Annu Rev Biophys Biomol Struct, 26, 223, 10.1146/annurev.biophys.26.1.223 · DOI
  21. Hofmann, 1999, Signalling states of photoactivated rhodopsin, Novart Found Symp, 224, 158
  22. Jung, 2003, Demonstration of a sensory rhodopsin in eubacteria, Mol Microbiol, 47, 1513, 10.1046/j.1365-2958.2003.03395.x · DOI
  23. Kamo, 2001, Photochemistry and photoinduced proton-transfer by pharaonis phoborhodopsin, Biochemistry, 66, 1277
  24. Kawanabe, 2007, Photochromism of Anabaena sensory rhodopsin, J Am Chem Soc, 129, 8644, 10.1021/ja072085a · DOI
  25. Klare, 2004, The archaeal sensory rhodopsin II/transducer complex: a model for transmembrane signal transfer, FEBS Lett, 564, 219, 10.1016/S0014-5793(04)00193-0 · DOI
  26. Koch, 1997, Steric hindrance between chromophore substituents as the driving force of rhodopsin photoisomerization: 10-methyl-13-demethyl retinal containing rhodopsin, Photochem Photobiol, 65, 181, 10.1111/j.1751-1097.1997.tb01896.x · DOI
  27. Kolbe, 2000, Structure of the light-driven chloride pump halorhodopsin at 1.8 Å resolution, Science, 288, 1390, 10.1126/science.288.5470.1390 · DOI
  28. Kreimer, 2001, Light perception and signal modulation during photoorientation of flagellate green algae, Vol. 1, 193
  29. Kunji, 2001, Electron crystallographic analysis of two-dimensional crystals of sensory rhodopsin II: a 6.9 Å projection structure, J Mol Biol, 308, 279, 10.1006/jmbi.2001.4565 · DOI
  30. Li, 2005, Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin, P Natl Acad Sci USA, 102, 17816, 10.1073/pnas.0509030102 · DOI
  31. Longstaff, 1986, Deprotonation of the Schiff base of rhodopsin is obligate in the activation of the G protein, P Natl Acad Sci USA, 83, 4209, 10.1073/pnas.83.12.4209 · DOI
  32. Luecke, 2001, Crystal structure of sensory rhodopsin II at 2.4 angstroms: insights into color tuning and transducer interaction, Science, 293, 1499, 10.1126/science.1062977 · DOI
  33. Luecke, 1999, Structure of bacteriorhodopsin at 1.55 Å resolution, J Mol Biol, 291, 899, 10.1006/jmbi.1999.3027 · DOI
  34. Moukhametzianov, 2006, Development of the signal in sensory rhodopsin and its transfer to the cognate transducer, Nature, 440, 115, 10.1038/nature04520 · DOI
  35. Nagel, 2005, Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses, Curr Biol, 15, 2279, 10.1016/j.cub.2005.11.032 · DOI
  36. Nagel, 2002, Channelrhodopsin-1: a light-gated proton channel in green algae, Science, 296, 2395, 10.1126/science.1072068 · DOI
  37. Nagel, 2003, Channelrhodopsin-2, a directly light-gated cation-selective membrane channel, P Natl Acad Sci USA, 100, 13940, 10.1073/pnas.1936192100 · DOI
  38. Oesterhelt, 1973, Functions of a new photoreceptor membrane, P Natl Acad Sci USA, 70, 2853, 10.1073/pnas.70.10.2853 · DOI
  39. Palczewski K, Kumasaka T, Hori T, Behnke CA, Motoshima H, Fox BA, Le Trong I, Teller DC, Okada T, Stenkamp RE, Yamamoto M, Miyano M (2000). Crystal structure of rhodopsin: a G protein-coupled receptor. Science 289:739–745. · DOI · Paper page
  40. Parkinson, 2005, Collaborative signaling by bacterial chemoreceptors, Curr Opin Microbiol, 8, 116, 10.1016/j.mib.2005.02.008 · DOI
  41. Perazzona, 1999, Identification of methylation sites and effects of phototaxis stimuli on transducer methylation in Halobacterium salinarum, J Bacteriol, 181, 5676, 10.1128/JB.181.18.5676-5683.1999 · DOI
  42. Royant, 2001, X-ray structure of sensory rhodopsin II at 2.1-Å resolution, P Natl Acad Sci USA, 98, 10131, 10.1073/pnas.181203898 · DOI
  43. Rudolph, 1995, Phosphorylation in halobacterial signal transduction, EMBO J, 14, 4249, 10.1002/j.1460-2075.1995.tb00099.x · DOI
  44. Rusch, 2007, The sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific, PLoS Biol, 5, e77, 10.1371/journal.pbio.0050077 · DOI
  45. Schmidt, 2006, Proteomic analysis of the eyespot of Chlamydomonas reinhardtii provides novel insights into its components and tactic movements, Plant Cell, 18, 1908, 10.1105/tpc.106.041749 · DOI
  46. Schobert, 1982, Halorhodopsin is a light-driven chloride pump, J Biol Chem, 257, 10306, 10.1016/S0021-9258(18)34020-1 · DOI
  47. Sharma, 2006, Microbial rhodopsins: functional versatility and genetic mobility, Trends Microbiol, 14, 463, 10.1016/j.tim.2006.09.006 · DOI
  48. Shieh, 1997, The steric trigger in rhodopsin activation, J Mol Biol, 269, 373, 10.1006/jmbi.1997.1035 · DOI
  49. Sineshchekov, 1999, Rhodopsin-mediated photosensing in green flagellated algae, Trends Plant Sci, 4, 201, 10.1016/S1360-1385(99)01409-0 · DOI
  50. Sineshchekov, 2005, Rhodopsin-mediated photoreception in cryptophyte flagellates, Biophys J, 89, 4310, 10.1529/biophysj.105.070920 · DOI
  51. Sineshchekov, 2002, Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii, P Natl Acad Sci USA, 99, 8689, 10.1073/pnas.122243399 · DOI
  52. Sineshchekov, 2005, Photochromicity of Anabaena sensory rhodopsin, an atypical microbial receptor with a cis-retinal light-adapted form, J Biol Chem, 280, 14663, 10.1074/jbc.M501416200 · DOI
  53. Spudich, 1982, Control of transmembrane ion fluxes to select halorhodopsin-deficient and other energy transduction mutants of Halobacterium halobium, P Natl Acad Sci USA, 79, 4308, 10.1073/pnas.79.14.4308 · DOI
  54. Spudich, 1989, Sensory rhodopsins I and II modulate a methylation/demethylation system in Halobacterium halobium phototaxis, P Natl Acad Sci USA, 86, 7746, 10.1073/pnas.86.20.7746 · DOI
  55. Spudich, 1997, Constitutive signaling by the phototaxis receptor sensory rhodopsin II from disruption of its protonated Schiff base-Asp73 intrahelical salt bridge, P Natl Acad Sci USA, 94, 4960, 10.1073/pnas.94.10.4960 · DOI
  56. Spudich, 2006, The multitalented microbial sensory rhodopsins, Trends Microbiol, 14, 480, 10.1016/j.tim.2006.09.005 · DOI
  57. Spudich, 1984, Mechanism of colour discrimination by a bacterial sensory rhodopsin, Nature, 312, 509, 10.1038/312509a0 · DOI
  58. Spudich, 2000, Retinylidene proteins: structures and functions from archaea to humans, Annu Rev Cell Dev Biol, 16, 365, 10.1146/annurev.cellbio.16.1.365 · DOI
  59. Sudo, 2006, Functional importance of the interhelical hydrogen bond between Thr204 and Tyr174 of sensory rhodopsin II and its alteration during the signaling process, J Biol Chem, 281, 34239, 10.1074/jbc.M605907200 · DOI
  60. Sudo, 2005, Linker region of a halobacterial transducer protein interacts directly with its sensor retinal protein, Biochemistry, 44, 6144, 10.1021/bi047573z · DOI
  61. Sudo, 2006, Three strategically placed hydrogen-bonding residues convert a proton pump into a sensory receptor, P Natl Acad Sci USA, 103, 16129, 10.1073/pnas.0607467103 · DOI
  62. Takahashi, 1985, A photosystem other than PS370 also mediates the negative phototaxis of Halobacterium halobium, FEMS Microbiol Lett, 28, 161, 10.1111/j.1574-6968.1985.tb00784.x · DOI
  63. Taniguchi, 2007, Dynamics of light-induced conformational changes of the phoborhodopsin/transducer complex formed in the n-dodecyl beta-D-maltoside micelle, Biochemistry, 46, 5349, 10.1021/bi602482s · DOI
  64. Venter, 2004, Environmental genome shotgun sequencing of the Sargasso Sea, Science, 304, 66, 10.1126/science.1093857 · DOI · Paper page
  65. Vogeley, 2004, Anabaena sensory rhodopsin: a photochromic color sensor at 2.0 A, Science, 306, 1390, 10.1126/science.1103943 · DOI
  66. Vogeley, 2007, Crystal structure of the Anabaena sensory rhodopsin transducer, J Mol Biol, 367, 741, 10.1016/j.jmb.2006.11.074 · DOI
  67. Wegener, 2001, Structural insights into the early steps of receptor-transducer signal transfer in archaeal phototaxis, Embo J, 20, 5312, 10.1093/emboj/20.19.5312 · DOI
  68. Witman, 1993, Chlamydomonas phototaxis, Trends Cell Biol, 3, 403, 10.1016/0962-8924(93)90091-E · DOI · Paper page
  69. Yan, 1991, Mechanism of activation of sensory rhodopsin-I: evidence for a steric trigger, P Natl Acad Sci USA, 88, 9412, 10.1073/pnas.88.21.9412 · DOI
  70. Yan, 1991, Evidence that the repellent receptor form of sensory rhodopsin I is an attractant signaling state, Photochem Photobiol, 54, 1023, 10.1111/j.1751-1097.1991.tb02125.x · DOI
  71. Yang, 2004, The cytoplasmic membrane-proximal domain of the HtrII transducer interacts with the E-F loop of photoactivated Natronomonas pharaonis sensory rhodopsin II, J Biol Chem, 279, 42970, 10.1074/jbc.M406504200 · DOI
  72. Yang, 2001, Light-induced structural changes occur in the transmembrane helices of the Natronobacterium pharaonis HtrII transducer, Biochemistry, 40, 14207, 10.1021/bi010985c · DOI

Cited by

Sorted by citations

See all 6

Metadata

Authors
Spudich, J. L., & Spudich, E. N.
Venue
Animal Models in Eye Research
Publisher
Elsevier
Published
2008
Pages
6-14
DOI
10.1016/b978-0-12-374169-1.00002-3
Cited by
6
References
1
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review