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The HDL proteome watch: compilation of studies leads to new insights on HDL function

Davidson, W. Sean, Shah, Amy S., Sexmith, Hannah, Gordon, Scott M.·2022·Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids

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Crossref · 10.1016/j.bbalip.2021.159072

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  • In plasma, ApoA1 is the main protein component of HDL and associates with a wide range of proteins that alter its function and metabolism.

    “In plasma, ApoA1 is the main protein component of HDL and is known to associate with a wide range of proteins that alter its function and metabolism (51, 69).”

    From Lipidome and proteome of astrocyte and microglia ApoE lipoprotein reveal differences based on cell type and ApoE isoform (2026) · cites this paper as [51]

    The Introduction identifies APOA1 as a dominant HDL protein and describes many other proteins in human HDL. The Lipid transport section says APOA1 is a structural scaffold on almost all HDL particles and interacts with lipid-remodeling factors. The paper describes effects of other proteins on HDL function and particle clearance, but these passages do not establish that a wide range of proteins alter APOA1’s own function and metabolism. (LLM, conf=0.82)

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  1. Kannel, 1969, Serum lipid fractions and risk of coronary heart disease. The Framingham study, Minn. Med., 52, 1225
  2. Adorni, 2021, High density lipoprotein cholesterol efflux capacity and atherosclerosis in cardiovascular disease: pathophysiological aspects and pharmacological perspectives, Cells, 10, 10.3390/cells10030574 · DOI
  3. Brites, 2017, Antioxidative activity of high-density lipoprotein (HDL): mechanistic insights into potential clinical benefit, BBA Clin., 8, 66, 10.1016/j.bbacli.2017.07.002 · DOI
  4. Lemmers, 2017, The anti-inflammatory function of high-density lipoprotein in type II diabetes: a systematic review, J. Clin. Lipidol., 11, 712, 10.1016/j.jacl.2017.03.013 · DOI
  5. Barter, 2019, HDL cholesterol and ASCVD risk stratification: a debate, Atherosclerosis, 283, 7, 10.1016/j.atherosclerosis.2019.01.001 · DOI
  6. Davidson, 2021, The difference between high density lipoprotein subfractions and subspecies: an evolving model in cardiovascular disease and diabetes, Curr. Atheroscler. Rep., 23, 23, 10.1007/s11883-021-00925-4 · DOI
  7. Kontush, 2013, Unraveling the complexities of the HDL lipidome, J. Lipid Res., 54, 2950, 10.1194/jlr.R036095 · DOI
  8. Sacks, 2020, Protein-defined subspecies of HDLs (High-density Lipoproteins) and differential risk of coronary heart disease in 4 prospective studies, Arterioscler. Thromb. Vasc. Biol., 40, 2714, 10.1161/ATVBAHA.120.314609 · DOI
  9. Shah, 2013, Proteomic diversity of high density lipoproteins: our emerging understanding of its importance in lipid transport and beyond, J. Lipid Res., 54, 2575, 10.1194/jlr.R035725 · DOI
  10. Ronsein, 2019, Deepening our understanding of HDL proteome, Expert Rev. Proteomics, 16, 749, 10.1080/14789450.2019.1650645 · DOI
  11. Karlsson, 2005, Lipoproteomics II: mapping of proteins in high-density lipoprotein using two-dimensional gel electrophoresis and mass spectrometry, HDL Compos., 5, 1431
  12. Heller, 2005, Mass spectrometry-based analytical tools for the molecular protein characterization of human plasma lipoproteins, Proteomics, 5, 2619, 10.1002/pmic.200401233 · DOI
  13. Rezaee, 2006, Proteomic analysis of high-density lipoprotein, Proteomics, 6, 721, 10.1002/pmic.200500191 · DOI
  14. Vaisar, 2015, Inflammatory remodeling of the HDL proteome impairs cholesterol efflux capacity, J. Lipid Res., 56, 1519, 10.1194/jlr.M059089 · DOI
  15. Davidson, 2009, Proteomic analysis of defined HDL subpopulations reveals particle-specific protein clusters: relevance to antioxidative function, Arterioscler. Thromb. Vasc. Biol., 29, 870, 10.1161/ATVBAHA.109.186031 · DOI · Paper page
  16. Gordon, 2013, Multi-dimensional co-separation analysis reveals protein-protein interactions defining plasma lipoprotein subspecies, Mol. Cell. Proteomics, 12, 3123, 10.1074/mcp.M113.028134 · DOI
  17. Gordon, 2013, The effects of type 2 diabetes on lipoprotein composition and arterial stiffness in male youth, Diabetes, 62, 2958, 10.2337/db12-1753 · DOI
  18. Melchior, 2017, Apolipoprotein A-II alters the proteome of human lipoproteins and enhances cholesterol efflux from ABCA1, J. Lipid Res., 58, 1374, 10.1194/jlr.M075382 · DOI
  19. Furtado, 2018, Distinct proteomic signatures in 16 HDL (High-density Lipoprotein) subspecies, Arterioscler. Thromb. Vasc. Biol., 38, 2827, 10.1161/ATVBAHA.118.311607 · DOI
  20. Trieb, 2016, Liver disease alters high-density lipoprotein composition, metabolism and function, Biochim. Biophys. Acta, 1861, 630, 10.1016/j.bbalip.2016.04.013 · DOI
  21. Kopecky, 2015, Restoration of renal function does not correct impairment of uremic HDL properties, J. Am. Soc. Nephrol., 26, 565, 10.1681/ASN.2013111219 · DOI
  22. Sreckovic, 2013, Distinct composition of human fetal HDL attenuates its anti-oxidative capacity, Biochim. Biophys. Acta, 1831, 737, 10.1016/j.bbalip.2012.12.015 · DOI
  23. Mange, 2012, HDL proteome in hemodialysis patients: a quantitative nanoflow liquid chromatography-tandem mass spectrometry approach, PLoSOne., 7, 10.1371/journal.pone.0034107 · DOI
  24. Watanabe, 2012, Proteomic profiling following immunoaffinity capture of high-density lipoprotein: association of acute-phase proteins and complement factors with proinflammatory high-density lipoprotein in rheumatoid arthritis, Arthritis Rheum., 64, 1828, 10.1002/art.34363 · DOI
  25. Godzien, 2016, A single in-vial dual extraction strategy for the simultaneous lipidomics and proteomics analysis of HDL and LDL fractions, J. Proteome Res., 15, 1762, 10.1021/acs.jproteome.5b00898 · DOI
  26. Burillo, 2016, Quantitative HDL proteomics identifies Peroxiredoxin-6 as a biomarker of human abdominal aortic aneurysm, Sci. Rep., 6, 38477, 10.1038/srep38477 · DOI
  27. Jorge, 2014, The human HDL proteome displays high inter-individual variability and is altered dynamically in response to angioplasty-induced atheroma plaque rupture, J. Proteome, 106, 61, 10.1016/j.jprot.2014.04.010 · DOI
  28. Pedret, 2015, Impact of virgin olive oil and phenol-enriched virgin olive oils on the HDL proteome in hypercholesterolemic subjects: a double blind, randomized, controlled, cross-over clinical trial (VOHF Study), PLoS One, 10, 10.1371/journal.pone.0129160 · DOI
  29. Shao, 2015, A cluster of proteins implicated in kidney disease is increased in high-density lipoprotein isolated from hemodialysis subjects, J. Proteome Res., 14, 2792, 10.1021/acs.jproteome.5b00060 · DOI
  30. Oberbach, 2016, Proteome profiles of HDL particles of patients with chronic heart failure are associated with immune response and also include bacteria proteins, Clin. Chim. Acta, 453, 114, 10.1016/j.cca.2015.12.005 · DOI
  31. Andraski, 2019, Effects of replacing dietary monounsaturated fat with carbohydrate on HDL (High-density Lipoprotein) protein metabolism and proteome composition in humans, Arterioscler. Thromb. Vasc. Biol., 39, 2411, 10.1161/ATVBAHA.119.312889 · DOI
  32. Singh, 2016, Multiple apolipoprotein kinetics measured in human HDL by high-resolution/accurate mass parallel reaction monitoring, J. Lipid Res., 57, 714, 10.1194/jlr.D061432 · DOI
  33. Collier, 2018, Rapid affinity enrichment of human apolipoprotein A-I associated lipoproteins for proteome analysis, J. Proteome Res., 17, 1183, 10.1021/acs.jproteome.7b00816 · DOI
  34. Lv, 2018, Apolipoprotein C-III in the high-density lipoprotein proteome of cerebral lacunar infarction patients impairs its anti-inflammatory function, Int. J. Mol. Med., 41, 61
  35. Mathew, 2018, Therapeutic lifestyle changes improve HDL function by inhibiting myeloperoxidase-mediated oxidation in patients with metabolic syndrome, Diabetes Care, 41, 2431, 10.2337/dc18-0049 · DOI
  36. Gourgari, 2019, Proteomic alterations of HDL in youth with type 1 diabetes and their associations with glycemic control: a case-control study, Cardiovasc. Diabetol., 18, 43, 10.1186/s12933-019-0846-9 · DOI
  37. Okada, 2019, Shotgun proteomic analysis reveals proteome alterations in HDL of patients with cholesteryl ester transfer protein deficiency, J Clin Lipidol., 13, 317, 10.1016/j.jacl.2019.01.002 · DOI
  38. Florens, 2019, Proteomic characterization of high-density lipoprotein particles from non-diabetic hemodialysis patients, Toxins (Basel), 11, 10.3390/toxins11110671 · DOI
  39. Kheniser, 2020, Temporal dynamics of high-density lipoprotein proteome in diet-controlled subjects with type 2 diabetes, Biomolecules, 10, 10.3390/biom10040520 · DOI
  40. Plubell, 2020, High-density lipoprotein carries markers that track with recovery from stroke, Circ. Res., 127, 1274, 10.1161/CIRCRESAHA.120.316526 · DOI
  41. Holzer, 2012, Psoriasis alters HDL composition and cholesterol efflux capacity, J. Lipid Res., 53, 1618, 10.1194/jlr.M027367 · DOI
  42. Ronsein, 2016, Targeted proteomics identifies Paraoxonase/Arylesterase 1 (PON1) and apolipoprotein cs as potential risk factors for hypoalphalipoproteinemia in diabetic subjects treated with fenofibrate and rosiglitazone, Mol. Cell. Proteomics, 15, 1083, 10.1074/mcp.M115.054528 · DOI
  43. Begue, 2021, Altered high-density lipoprotein composition and functions during severe COVID-19, Sci. Rep., 11, 2291, 10.1038/s41598-021-81638-1 · DOI
  44. Gordon, 2018, High density lipoprotein proteome is associated with cardiovascular risk factors and atherosclerosis burden as evaluated by coronary CT angiography, Atherosclerosis, 278, 278, 10.1016/j.atherosclerosis.2018.09.032 · DOI
  45. De Lalla, 1954, Ultracentrifugal analysis of serum lipoproteins, Methods Biochem. Anal., 1, 459, 10.1002/9780470110171.ch16 · DOI
  46. Havel, 1955, The distribution and chemical composition of ultracentrifugally separated lipoproteins in human serum, J. Clin. Invest., 34, 1345, 10.1172/JCI103182 · DOI
  47. Kunitake, 1982, Factors affecting the integrity of high density lipoproteins in the ultracentrifuge, J. Lipid Res., 23, 936, 10.1016/S0022-2275(20)38097-4 · DOI
  48. Munroe, 2015, Excessive centrifugal fields damage high density lipoprotein, J. Lipid Res., 56, 1172, 10.1194/jlr.M058735 · DOI
  49. Stahlman, 2008, Proteomics and lipids of lipoproteins isolated at low salt concentrations in D2O/sucrose or in KBr, J. Lipid Res., 49, 481, 10.1194/jlr.D700025-JLR200 · DOI
  50. Yuana, 2014, Co-isolation of extracellular vesicles and high-density lipoproteins using density gradient ultracentrifugation, J. Extracell Vesicles, 3, 10.3402/jev.v3.23262 · DOI
  51. Gordon, 2015, Rosuvastatin alters the proteome of high density lipoproteins: generation of alpha-1-antitrypsin enriched particles with anti-inflammatory properties, Mol. Cell. Proteomics, 14, 3247, 10.1074/mcp.M115.054031 · DOI
  52. Gordon, 2010, Proteomic characterization of human plasma high density lipoprotein fractionated by gel filtration chromatography, J. Proteome Res., 9, 5239, 10.1021/pr100520x · DOI
  53. Jeyarajah, 2006, Lipoprotein particle analysis by nuclear magnetic resonance spectroscopy, Clin. Lab. Med., 26, 847, 10.1016/j.cll.2006.07.006 · DOI
  54. Caulfield, 2008, Direct determination of lipoprotein particle sizes and concentrations by ion mobility analysis, Clin.Chem., 54, 1307, 10.1373/clinchem.2007.100586 · DOI
  55. Cheung, 1984, Characterization of lipoprotein particles isolated by immunoaffinity chromatography. Particles containing A-I and A-II and particles containing A-I but no A-II, J. Biol. Chem., 259, 12201, 10.1016/S0021-9258(20)71339-6 · DOI
  56. Duka, 2013, ApoA-IV promotes the biogenesis of apoA-IV-containing HDL particles with the participation of ABCA1 and LCAT, J. Lipid Res., 54, 107, 10.1194/jlr.M030114 · DOI
  57. Moore, 2005, Increased atherosclerosis in mice lacking apolipoprotein A-I attributable to both impaired reverse cholesterol transport and increased inflammation, Circ.Res., 97, 763, 10.1161/01.RES.0000185320.82962.F7 · DOI
  58. Romeo, 2007, Attenuated expression of profilin-1 confers protection from atherosclerosis in the LDL receptor null mouse, Circ. Res., 101, 357, 10.1161/CIRCRESAHA.107.151399 · DOI
  59. van der Vliet, 2001, Apolipoprotein A-V: a novel apolipoprotein associated with an early phase of liver regeneration, J. Biol. Chem., 276, 44512, 10.1074/jbc.M106888200 · DOI
  60. Gordon, 2017, High density lipoproteins are modulators of protease activity: implications in inflammation, complement activation, and atherothrombosis, Atherosclerosis, 259, 104, 10.1016/j.atherosclerosis.2016.11.015 · DOI
  61. Morton, 2019, Dietary unsaturated fat increases HDL metabolic pathways involving apoE favorable to reverse cholesterol transport, JCI Insight, 4, 10.1172/jci.insight.124620 · DOI
  62. Deguchi, 2005, High-density lipoprotein deficiency and dyslipoproteinemia associated with venous thrombosis in men, Circulation, 112, 893, 10.1161/CIRCULATIONAHA.104.521344 · DOI
  63. Morelli, 2017, Lipid levels and risk of venous thrombosis: results from the MEGA-study, Eur. J. Epidemiol., 32, 669, 10.1007/s10654-017-0251-1 · DOI
  64. van der Stoep, 2014, High-density lipoprotein as a modulator of platelet and coagulation responses, Cardiovasc. Res., 103, 362, 10.1093/cvr/cvu137 · DOI
  65. Cuchel, 2002, The role of high density lipoproteins in thrombosis, ScientificWorldJournal, 2, 89, 10.1100/tsw.2002.85 · DOI
  66. Xu, 2018, Apolipoprotein A-IV binds alphaIIbbeta3 integrin and inhibits thrombosis, Nat. Commun., 9, 3608, 10.1038/s41467-018-05806-0 · DOI
  67. Law, 2006, An overview of the serpin superfamily, Genome Biol., 7, 216, 10.1186/gb-2006-7-5-216 · DOI
  68. Dollery, 2003, Neutrophil elastase in human atherosclerotic plaques: production by macrophages, Circulation, 107, 2829, 10.1161/01.CIR.0000072792.65250.4A · DOI
  69. Rohrer, 2006, Binding, internalization and transport of apolipoprotein A-I by vascular endothelial cells, Biochim.Biophys.Acta, 1761, 186, 10.1016/j.bbalip.2006.01.009 · DOI
  70. Ortiz-Munoz, 2009, HDL antielastase activity prevents smooth muscle cell anoikis, a potential new antiatherogenic property, FASEB J., 23, 3129, 10.1096/fj.08-127928 · DOI
  71. Sukhova, 2005, Cystatin C deficiency increases elastic lamina degradation and aortic dilatation in apolipoprotein E-null mice, Circ. Res., 96, 368, 10.1161/01.RES.0000155964.34150.F7 · DOI
  72. Wu, 2018, Cysteine protease cathepsins in atherosclerotic cardiovascular diseases, J. Atheroscler. Thromb., 25, 111, 10.5551/jat.RV17016 · DOI
  73. Cheung, 2010, Phospholipid transfer protein in human plasma associates with proteins linked to immunity and inflammation, Biochemistry, 49, 7314, 10.1021/bi100359f · DOI
  74. Reis, 2019, New insights into the immune functions of complement, Nat. Rev. Immunol., 19, 503, 10.1038/s41577-019-0168-x · DOI
  75. Parra, 2012, Complement system and small HDL particles are associated with subclinical atherosclerosis in SLE patients, Atherosclerosis, 225, 224, 10.1016/j.atherosclerosis.2012.08.029 · DOI
  76. Wheeler, 2010, The trypanolytic factor-mechanism, impacts and applications, Trends Parasitol., 26, 457, 10.1016/j.pt.2010.05.005 · DOI
  77. Vanhollebeke, 2010, The trypanolytic factor of human serum: many ways to enter the parasite, a single way to kill, Mol.Microbiol., 76, 806, 10.1111/j.1365-2958.2010.07156.x · DOI
  78. Greene, 2016, Trypanosome lytic Factor-1 initiates oxidation-stimulated osmotic lysis of trypanosoma brucei brucei, J. Biol. Chem., 291, 3063, 10.1074/jbc.M115.680371 · DOI
  79. Han, 2021, Enterically derived high-density lipoprotein restrains liver injury through the portal vein, Science, 373, 10.1126/science.abe6729 · DOI · Paper page
  80. Mahley, 1999, Remnant lipoprotein metabolism: key pathways involving cell-surface heparan sulfate proteoglycans and apolipoprotein E, J. Lipid Res., 40, 1, 10.1016/S0022-2275(20)33334-4 · DOI · Paper page
  81. Cockerill, 1995, High-density lipoproteins inhibit cytokine-induced expression of endothelial cell adhesion molecules, Arterioscler. Thromb. Vasc. Biol., 15, 1987, 10.1161/01.ATV.15.11.1987 · DOI
  82. Zuchtriegel, 2020, Vitronectin stabilizes intravascular adhesion of neutrophils by coordinating beta2 integrin clustering, Haematologica
  83. Persegol, 2006, Inability of HDL from type 2 diabetic patients to counteract the inhibitory effect of oxidised LDL on endothelium-dependent vasorelaxation, Diabetologia, 49, 1380, 10.1007/s00125-006-0244-1 · DOI
  84. Christoffersen, 2011, Endothelium-protective sphingosine-1-phosphate provided by HDL-associated apolipoprotein M, Proc. Natl. Acad. Sci. U. S. A., 108, 9613, 10.1073/pnas.1103187108 · DOI
  85. Christoffersen, 2008, The signal peptide anchors apolipoprotein M in plasma lipoproteins and prevents rapid clearance of apolipoprotein M from plasma, J. Biol. Chem., 283, 18765, 10.1074/jbc.M800695200 · DOI
  86. Chen, 2020, The apoM-S1P axis in hepatic diseases, Clin. Chim. Acta, 511, 235, 10.1016/j.cca.2020.10.023 · DOI
  87. Alwaili, 2012, The HDL proteome in acute coronary syndromes shifts to an inflammatory profile, Biochim. Biophys. Acta, 1821, 405, 10.1016/j.bbalip.2011.07.013 · DOI
  88. Vaisar, 2012, Proteomics investigations of HDL: challenges and promise, Curr.Vasc.Pharmacol., 10, 410, 10.2174/157016112800812755 · DOI

Cited by

Sorted by citations

Authors
Davidson, W. S., Shah, A. S., Sexmith, H., & Gordon, S. M.
Venue
Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids
Publisher
Elsevier BV
Published
2022-02
Volume
1867
Issue
2
Pages
159072
ISSN
1388-1981
Cited by
107
References
3
Language
en

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