Ezh2 and Runx1 Mutations Collaborate to Initiate Lympho-Myeloid Leukemia in Early Thymic Progenitors
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Lympho-myeloid restricted early thymic progenitors (ETPs) are postulated to be the cell of origin for ETP leukemias, a therapy-resistant leukemia associated with frequent co-occurrence of EZH2 and RUNX1 inactivating mutations, and constitutively activating signaling pathway mutations. In a mouse model, we demonstrate that Ezh2 and Runx1 inactivation targeted to early lymphoid progenitors causes a marked expansion of pre-leukemic ETPs, showing transcriptional signatures characteristic of ETP leukemia. Addition of a RAS-signaling pathway mutation (Flt3-ITD) results in an aggressive leukemia co-expressing myeloid and lymphoid genes, which can be established and propagated in vivo by the expanded ETPs. Both mouse and human ETP leukemias show sensitivity to BET inhibition in vitro and in vivo, which reverses aberrant gene expression induced by Ezh2 inactivation.
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The data are compatible with a fitness advantage of monosomy 7 cells, a recurrent event in TP53-sAML, driven by activation of signaling pathways that may relate to deletion of chromosome 7 genes such as EZH2.
“Together, these data are compatible with a fitness advantage of monosomy 7 cells, a recurrent event in TP53-sAML (Extended Data Fig. 1b,c), driven by activation of signaling pathways that may relate to deletion of chromosome 7 genes such as EZH2 (ref. 20).”
From Single-cell multi-omics identifies chronic inflammation as a driver of TP53-mutant leukemic evolution (2023) · cites this paper as [20]
The Discussion (page unavailable) reports that Ezh2 loss increased expression of oncogenic Flt3-ITD signaling in a mouse model of early thymic progenitor leukemia, supporting the proposed link between EZH2 loss and signaling. It does not establish that chromosome 7 deletion activates signaling or gives monosomy 7 cells a fitness advantage in TP53-sAML; the paper cautions that its findings cannot be extrapolated to other contexts without validation. (LLM, conf=0.86)
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The Polycomb complex PRC2 and its mark in life
Margueron, R., & Reinberg, D. (2011) · Nature · doi:10.1038/nature09784 · Cited by 3,347 · see citing works
The genetic basis of early T-cell precursor acute lymphoblastic leukaemia
Zhang, J., Ding, L., Holmfeldt, L., Wu, G., Heatley, S. L., Payne-Turner, D., Easton, J., Chen, X., Wang, J., Rusch, M., et al. (2012) · Nature · doi:10.1038/nature10725 · Cited by 1,596 · see citing works
Identification of pre-leukaemic haematopoietic stem cells in acute leukaemia
Shlush, L. I., Zandi, S., Mitchell, A., Chen, W. C., Brandwein, J. M., Gupta, V., Kennedy, J. A., Schimmer, A. D., Schuh, A. C., Yee, K. W., et al. (2014) · Nature · doi:10.1038/nature13038 · Cited by 1,443 · see citing works
Ichikawa, M., Asai, T., Saito, T., Yamamoto, G., Seo, S., Yamazaki, I., Yamagata, T., Mitani, K., Chiba, S., Hirai, H., et al. (2004) · Nature Medicine · doi:10.1038/nm997 · Cited by 596 · see citing works
Loss of Runx1 perturbs adult hematopoiesis and is associated with a myeloproliferative phenotype
Growney, J. D., Shigematsu, H., Li, Z., Lee, B. H., Adelsperger, J., Rowan, R., Curley, D. P., Kutok, J. L., Akashi, K., Williams, I. R., et al. (2005) · Blood · doi:10.1182/blood-2004-08-3280 · Cited by 462 · see citing works
Zhang, J. A., Mortazavi, A., Williams, B. A., Wold, B. J., & Rothenberg, E. V. (2012) · Cell · doi:10.1016/j.cell.2012.01.056 · Cited by 337 · see citing works
Flagged first, then by citations
Research works printed but not linked: 40
- [1]1. Adolfsson, J. ∙ Mansson, R. ∙ Buza-Vidas, N. ... Identification of Flt3+ lympho-myeloid stem cells lacking erythro-megakaryocytic potential: a revised road map for adult blood lineage commitment Cell. 2005; 121:295-306 Full Text Full Text (PDF) Scopus (968) PubMed Google Scholar
- [2]2. Bell, J.J. ∙ Bhandoola, A. The earliest thymic progenitors for T cells possess myeloid lineage potential Nature. 2008; 452:764-767 Crossref Scopus (363) PubMed Google Scholar
- [3]3. Boiers, C. ∙ Carrelha, J. ∙ Lutteropp, M. ... Lymphomyeloid contribution of an immune-restricted progenitor emerging prior to definitive hematopoietic stem cells Cell Stem Cell. 2013; 13:535-548 Full Text Full Text (PDF) Scopus (214) PubMed Google Scholar
- [4]4. Coustan-Smith, E. ∙ Mullighan, C.G. ∙ Onciu, M. ... Early T-cell precursor leukaemia: a subtype of very high-risk acute lymphoblastic leukaemia Lancet Oncol. 2009; 10:147-156 Full Text Full Text (PDF) Scopus (770) PubMed Google Scholar
- [5]5. Danis, E. ∙ Yamauchi, T. ∙ Echanique, K. ... Ezh2 controls an early hematopoietic program and growth and survival signaling in early T cell precursor acute lymphoblastic leukemia Cell Rep. 2016; 14:1953-1965 Full Text Full Text (PDF) Scopus (52) PubMed Google Scholar
- [6]6. De Raedt, T. ∙ Beert, E. ∙ Pasmant, E. ... PRC2 loss amplifies Ras-driven transcription and confers sensitivity to BRD4-based therapies Nature. 2014; 514:247-251 Crossref Scopus (367) PubMed Google Scholar
- [7]7. Della Gatta, G. ∙ Palomero, T. ∙ Perez-Garcia, A. ... Reverse engineering of TLX oncogenic transcriptional networks identifies RUNX1 as tumor suppressor in T-ALL Nat. Med. 2012; 18:436-440 Crossref Scopus (127) PubMed Google Scholar
- [8]8. Dorantes-Acosta, E. ∙ Pelayo, R. Lineage switching in acute leukemias: a consequence of stem cell plasticity? Bone Marrow Res. 2012; 2012:406796 Crossref PubMed Google Scholar
- [9]9. Drynan, L.F. ∙ Pannell, R. ∙ Forster, A. ... Mll fusions generated by Cre-loxP-mediated de novo translocations can induce lineage reassignment in tumorigenesis EMBO J. 2005; 24:3136-3146 Crossref Scopus (68) PubMed Google Scholar
- [10]10. Goardon, N. ∙ Marchi, E. ∙ Atzberger, A. ... Coexistence of LMPP-like and GMP-like leukemia stem cells in acute myeloid leukemia Cancer Cell. 2011; 19:138-152 Full Text Full Text (PDF) Scopus (511) PubMed Google Scholar
- [11]11. Goossens, S. ∙ Radaelli, E. ∙ Blanchet, O. ... ZEB2 drives immature T-cell lymphoblastic leukaemia development via enhanced tumour-initiating potential and IL-7 receptor signalling Nat. Commun. 2015; 6:5794 Crossref Scopus (74) PubMed Google Scholar
- [14]14. Kiel, M.J. ∙ Yilmaz, O.H. ∙ Iwashita, T. ... SLAM family receptors distinguish hematopoietic stem and progenitor cells and reveal endothelial niches for stem cells Cell. 2005; 121:1109-1121 Full Text Full Text (PDF) Scopus (2539) PubMed Google Scholar
- [15]15. Laiosa, C.V. ∙ Stadtfeld, M. ∙ Xie, H. ... Reprogramming of committed T cell progenitors to macrophages and dendritic cells by C/EBP alpha and PU.1 transcription factors Immunity. 2006; 25:731-744 Full Text Full Text (PDF) Scopus (293) PubMed Google Scholar
- [16]16. Lee, B.H. ∙ Tothova, Z. ∙ Levine, R.L. ... FLT3 mutations confer enhanced proliferation and survival properties to multipotent progenitors in a murine model of chronic myelomonocytic leukemia Cancer Cell. 2007; 12:367-380 Full Text Full Text (PDF) Scopus (176) PubMed Google Scholar
- [17]17. Lobrich, M. ∙ Jeggo, P.A. The impact of a negligent G2/M checkpoint on genomic instability and cancer induction Nat. Rev. Cancer. 2007; 7:861-869 Crossref Scopus (483) PubMed Google Scholar
- [18]18. Luc, S. ∙ Luis, T.C. ∙ Boukarabila, H. ... The earliest thymic T cell progenitors sustain B cell and myeloid lineage potential Nat. Immunol. 2012; 13:412-419 Crossref Scopus (108) PubMed Google Scholar
- [19]19. Magee, J.A. ∙ Piskounova, E. ∙ Morrison, S.J. Cancer stem cells: impact, heterogeneity, and uncertainty Cancer Cell. 2012; 21:283-296 Full Text Full Text (PDF) Scopus (948) PubMed Google Scholar
- [21]21. Matutes, E. ∙ Pickl, W.F. ∙ Van't Veer, M. ... Mixed-phenotype acute leukemia: clinical and laboratory features and outcome in 100 patients defined according to the WHO 2008 classification Blood. 2011; 117:3163-3171 Crossref Scopus (244) PubMed Google Scholar
- [22]22. Maude, S.L. ∙ Dolai, S. ∙ Delgado-Martin, C. ... Efficacy of JAK/STAT pathway inhibition in murine xenograft models of early T-cell precursor (ETP) acute lymphoblastic leukemia Blood. 2015; 125:1759-1767 Crossref Scopus (188) PubMed Google Scholar
- [23]23. McCormack, M.P. ∙ Forster, A. ∙ Drynan, L. ... The LMO2 T-cell oncogene is activated via chromosomal translocations or retroviral insertion during gene therapy but has no mandatory role in normal T-cell development Mol. Cell. Biol. 2003; 23:9003-9013 Crossref Scopus (118) PubMed Google Scholar
- [24]24. Mead, A.J. ∙ Kharazi, S. ∙ Atkinson, D. ... FLT3-ITDs instruct a myeloid differentiation and transformation bias in lymphomyeloid multipotent progenitors Cell Rep. 2013; 3:1766-1776 Full Text Full Text (PDF) Scopus (40) PubMed Google Scholar
- [25]25. Milne, T.A. ∙ Zhao, K. ∙ Hess, J.L. Chromatin immunoprecipitation (ChIP) for analysis of histone modifications and chromatin-associated proteins Methods Mol. Biol. 2009; 538:409-423 Crossref Scopus (67) PubMed Google Scholar
- [26]26. Neff, T. ∙ Sinha, A.U. ∙ Kluk, M.J. ... Polycomb repressive complex 2 is required for MLL-AF9 leukemia Proc. Natl. Acad. Sci. USA. 2012; 109:5028-5033 Crossref Scopus (182) PubMed Google Scholar
- [27]27. Niebuhr, B. ∙ Kriebitzsch, N. ∙ Fischer, M. ... Runx1 is essential at two stages of early murine B-cell development Blood. 2013; 122:413-423 Crossref Scopus (42) PubMed Google Scholar
- [28]28. Ntziachristos, P. ∙ Tsirigos, A. ∙ Welstead, G.G. ... Contrasting roles of histone 3 lysine 27 demethylases in acute lymphoblastic leukaemia Nature. 2014; 514:513-517 Crossref Scopus (308) PubMed Google Scholar
- [29]29. Picelli, S. ∙ Faridani, O.R. ∙ Björklund, A.K. ... Full-length RNA-seq from single cells using Smart-seq2 Nat. Protoc. 2014; 9:171-181 Crossref Scopus (2539) PubMed Google Scholar
- [30]30. Rathert, P. ∙ Roth, M. ∙ Neumann, T. ... Transcriptional plasticity promotes primary and acquired resistance to BET inhibition Nature. 2015; 525:543-547 Crossref Scopus (392) PubMed Google Scholar
- [31]31. Riemke, P. ∙ Czeh, M. ∙ Fischer, J. ... Myeloid leukemia with transdifferentiation plasticity developing from T-cell progenitors EMBO J. 2016; 35:2399-2416 Crossref Scopus (14) PubMed Google Scholar
- [32]32. Roux, P.P. ∙ Shahbazian, D. ∙ Vu, H. ... RAS/ERK signaling promotes site-specific ribosomal protein S6 phosphorylation via RSK and stimulates cap-dependent translation J. Biol. Chem. 2007; 282:14056-14064 Crossref Scopus (582) PubMed Google Scholar
- [33]33. Sanjuan-Pla, A. ∙ Macaulay, I.C. ∙ Jensen, C.T. ... Platelet-biased stem cells reside at the apex of the haematopoietic stem-cell hierarchy Nature. 2013; 502:232-236 Crossref Scopus (448) PubMed Google Scholar
- [34]34. Sashida, G. ∙ Harada, H. ∙ Matsui, H. ... Ezh2 loss promotes development of myelodysplastic syndrome but attenuates its predisposition to leukaemic transformation Nat. Commun. 2014; 5:4177 Crossref Scopus (140) PubMed Google Scholar
- [35]35. Schlenner, S.M. ∙ Rodewald, H.R. Early T cell development and the pitfalls of potential Trends Immunol. 2010; 31:303-310 Full Text Full Text (PDF) Scopus (45) PubMed Google Scholar
- [37]37. Su, I.H. ∙ Basavaraj, A. ∙ Krutchinsky, A.N. ... Ezh2 controls B cell development through histone H3 methylation and Igh rearrangement Nat. Immunol. 2003; 4:124-131 Crossref Scopus (508) PubMed Google Scholar
- [38]38. Su, I.H. ∙ Dobenecker, M.W. ∙ Dickinson, E. ... Polycomb group protein ezh2 controls actin polymerization and cell signaling Cell. 2005; 121:425-436 Full Text Full Text (PDF) Scopus (316) PubMed Google Scholar
- [39]39. Treanor, L.M. ∙ Zhou, S. ∙ Janke, L. ... Interleukin-7 receptor mutants initiate early T cell precursor leukemia in murine thymocyte progenitors with multipotent potential J. Exp. Med. 2014; 211:701-713 Crossref Scopus (83) PubMed Google Scholar
- [40]40. van Dongen, J.J. ∙ Krissansen, G.W. ∙ Wolvers-Tettero, I.L. ... Cytoplasmic expression of the CD3 antigen as a diagnostic marker for immature T-cell malignancies Blood. 1988; 71:603-612 Crossref PubMed Google Scholar
- [41]41. Van Vlierberghe, P. ∙ Ambesi-Impiombato, A. ∙ Perez-Garcia, A. ... ETV6 mutations in early immature human T cell leukemias J. Exp. Med. 2011; 208:2571-2579 Crossref Scopus (167) PubMed Google Scholar
- [42]42. Woll, P.S. ∙ Kjällquist, U. ∙ Chowdhury, O. ... Myelodysplastic syndromes are propagated by rare and distinct human cancer stem cells in vivo Cancer Cell. 2014; 25:794-808 Full Text Full Text (PDF) Scopus (253) PubMed Google Scholar
- [43]43. Wu, J.Q. ∙ Seay, M. ∙ Schulz, V.P. ... Tcf7 is an important regulator of the switch of self-renewal and differentiation in a multipotential hematopoietic cell line PLoS Genet. 2012; 8:e1002565 Crossref Scopus (81) PubMed Google Scholar
- [44]44. Yu, S. ∙ Zhou, X. ∙ Steinke, F.C. ... The TCF-1 and LEF-1 transcription factors have cooperative and opposing roles in T cell development and malignancy Immunity. 2012; 37:813-826 Full Text Full Text (PDF) Scopus (149) PubMed Google Scholar
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Self-citation
- Authors
- Booth, C. A. G., Barkas, N., Neo, W. H., Boukarabila, H., Soilleux, E. J., Giotopoulos, G., Farnoud, N., Giustacchini, A., Ashley, N., Carrelha, J., Jamieson, L., Atkinson, D., Bouriez-Jones, T., Prinjha, R. K., Milne, T. A., Teachey, D. T., Papaemmanuil, E., Huntly, B. J. P., Jacobsen, S. E. W., & Mead, A. J.
- Affiliations
- University of Oxford (GB)
- University of Cambridge (GB)
- Wellcome/MRC Cambridge Stem Cell Institute (GB)
- Memorial Sloan Kettering Cancer Center (US)
- GlaxoSmithKline (United Kingdom) (GB)
- Children's Hospital of Philadelphia (US)
- Karolinska University Hospital (SE)
- Churchill Hospital (GB)
- Corresponding author
- Jacobsen, Sten Eirik W.
- Mead, Adam J.
- ORCID
- Venue
- Cancer Cell
- Publisher
- Elsevier BV
- Published
- 2018-02
- Volume
- 33
- Issue
- 2
- Pages
- 274-291.e8
- ISSN
- 1535-6108 (ISSN-L)
- OpenAlex
- W2787228004
- Cited by
- 57
- References
- 6
- Citations by year
- 2025: 4 · 2024: 3 · 2023: 7 · 2022: 6 · 2021: 12 · 2020: 12 · 2019: 8 · 2018: 5
- FWCI
- 6.62
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cancer Cell (publishedVersion)
- PubMed (publishedVersion)
- UCL Discovery (University College London) (submittedVersion)
- Apollo (University of Cambridge) (submittedVersion, cc-by-nc-nd)
- Apollo
- Funders
- Kay Kendall Leukaemia Fund (KKL811)
- Medical Research Council (MR/L006340/1, MC_UU_12009/5, MR/M00919X/1, MC_UU_12009)
- Swedish Research Council
- NIHR (131/030, 101/517)
- EPA (CF182, CF170)
- WIMM (G0902418, MC_UU_12025)
- Oxford-Wellcome Trust
- Topics
- Health Sciences › Medicine › Hematology › Acute Myeloid Leukemia Research
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Acute Lymphoblastic Leukemia research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Degradation and Inhibitors
- Keywords
- EZH2 mutation, RUNX1 mutation, Ras signaling, FLT3-ITD, BET inhibition, transcriptional dysregulation, mouse model, treatment resistance
- MeSH terms
- Enhancer of Zeste Homolog 2 Protein, Animals, Mutation, Stem Cells, Signal Transduction, Leukemia, Myeloid, Acute, Gene Expression Regulation, Leukemic, Mice, Knockout, Myeloid Cells, Core Binding Factor Alpha 2 Subunit
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