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A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications

Open access
Wright, George W., Huang, Da Wei, Phelan, James D., Coulibaly, Zana A., Roulland, Sandrine, Young, Ryan M., Wang, James Q., Schmitz, Roland, Morin, Ryan D., Tang, Jeffrey, Jiang, Aixiang, Bagaev, Aleksander, Plotnikova, Olga, Kotlov, Nikita, Johnson, Calvin A., Wilson, Wyndham H., Scott, David W., Staudt, Louis M.·2020·Cancer Cell

Abstract

SUMMARY The development of precision medicine approaches for diffuse large B cell lymphoma (DLBCL) is confounded by its pronounced genetic, phenotypic, and clinical heterogeneity. Recent multiplatform genomic studies revealed the existence of genetic subtypes of DLBCL using clustering methodologies. Here, we describe an algorithm that determines the probability that a patient’s lymphoma belongs to one of seven genetic subtypes based on its genetic features. This classification reveals genetic similarities between these DLBCL subtypes and various indolent and extranodal lymphoma types, suggesting a shared pathogenesis. These genetic subtypes also have distinct gene expression profiles, immune microenvironments, and outcomes following immunochemotherapy. Functional analysis of genetic subtype models highlights distinct vulnerabilities to targeted therapy, supporting the use of this classification in precision medicine trials.

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Metadata

Authors
Wright, G. W., Huang, D. W., Phelan, J. D., Coulibaly, Z. A., Roulland, S., Young, R. M., Wang, J. Q., Schmitz, R., Morin, R. D., Tang, J., Jiang, A., Bagaev, A., Plotnikova, O., Kotlov, N., Johnson, C. A., Wilson, W. H., Scott, D. W., & Staudt, L. M.
Venue
Cancer Cell
Publisher
Elsevier BV
Published
2020-04
Volume
37
Issue
4
Pages
551-568.e14
ISSN
1535-6108 (ISSN-L)
OpenAlex
W3016044607
Cited by
1,169
References
5
FWCI
86.36
Type
journal article
Language
en
Open access
bronze

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The paper
Wright, G. W., Huang, D. W., Phelan, J. D., Coulibaly, Z. A., Roulland, S., Young, R. M., Wang, J. Q., Schmitz, R., Morin, R. D., Tang, J., Jiang, A., Bagaev, A., Plotnikova, O., Kotlov, N., Johnson, C. A., Wilson, W. H., Scott, D. W., & Staudt, L. M. (2020). A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications. Cancer Cell. https://doi.org/10.1016/j.ccell.2020.03.015

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.