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Cited by 479

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DksA

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Paul, Brian J., Barker, Melanie M., Ross, Wilma, Schneider, David A., Webb, Cathy, Foster, John W., Gourse, Richard L.·2004·Cell
DOI 10.1016/j.cell.2004.07.009
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Research works printed but not linked: 37

  1. Afflerbach, 1998, Effects of the Escherichia coli DNA-binding protein H-NS on rRNA synthesis in vivo, Mol. Microbiol., 28, 641, 10.1046/j.1365-2958.1998.00829.x · DOI
  2. Artsimovitch, 2004, Structural basis for transcription regulation by alarmone ppGpp, Cell, 117, 299, 10.1016/S0092-8674(04)00401-5 · DOI · Paper page
  3. Barker, 2001, Regulation of rRNA transcription correlates with NTP-sensing, J. Bacteriol., 183, 6315, 10.1128/JB.183.21.6315-6323.2001 · DOI
  4. Barker, 2001, Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP, J. Mol. Biol., 305, 689, 10.1006/jmbi.2000.4328 · DOI · Paper page
  5. Barker, 2001, Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro, J. Mol. Biol., 305, 673, 10.1006/jmbi.2000.4327 · DOI · Paper page
  6. Bartlett, 1994, Growth rate-dependent control of the rrnB P1 core promoter in Escherichia coli, J. Bacteriol., 176, 5560, 10.1128/jb.176.17.5560-5564.1994 · DOI
  7. Bartlett, 1998, RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters, J. Mol. Biol., 279, 331, 10.1006/jmbi.1998.1779 · DOI
  8. Bass, 1996, Multicopy suppressors of prc mutant Escherichia coli include two HtrA (DegP) protease homologs (HhoAB), DksA, and a truncated R1pA, J. Bacteriol., 178, 1154, 10.1128/jb.178.4.1154-1161.1996 · DOI
  9. Bokal, 1995, The transcriptional activator protein FIS, J. Mol. Biol., 245, 197, 10.1006/jmbi.1994.0016 · DOI
  10. Branny, 2001, Inhibition of quorum sensing by a Pseudomonas aeruginosa dksA homologue, J. Bacteriol., 183, 1531, 10.1128/JB.183.5.1531-1539.2001 · DOI
  11. Brown, 2002, DksA affects ppGpp induction of RpoS at a translational level, J. Bacteriol., 184, 4455, 10.1128/JB.184.16.4455-4465.2002 · DOI · Paper page
  12. Choy, 2000, The study of guanosine 5′-diphosphate 3′-diphosphate-mediated transcription regulation in vitro using a coupled transcription-translation system, J. Biol. Chem., 275, 6783, 10.1074/jbc.275.10.6783 · DOI
  13. Flynn, 2003, Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals, Mol. Cell, 11, 671, 10.1016/S1097-2765(03)00060-1 · DOI · Paper page
  14. Gaal, 1990, Guanosine 3′-diphosphate 5′-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coli, Proc. Natl. Acad. Sci. USA, 87, 5533, 10.1073/pnas.87.14.5533 · DOI
  15. Gaal, 1997, Transcription regulation by initiating NTP concentration, Science, 278, 2092, 10.1126/science.278.5346.2092 · DOI · Paper page
  16. Gaal, 2001, Promoter recognition and discrimination by EσS RNA polymerase, Mol. Microbiol., 42, 939, 10.1046/j.1365-2958.2001.02703.x · doi:10.1046/j.1365-2958.2001.02703.x
  17. Gourse, 1988, Visualization and quantitative analysis of complex formation between E. coli RNA polymerase and an rRNA promoter in vitro, Nucleic Acids Res., 16, 9789, 10.1093/nar/16.20.9789 · DOI
  18. Gourse, 1996, rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli, Annu. Rev. Microbiol., 50, 645, 10.1146/annurev.micro.50.1.645 · DOI · Paper page
  19. Hirsch, 2002, Role of ppGpp in rpoS stationary-phase regulation in Escherichia coli, J. Bacteriol., 184, 5077, 10.1128/JB.184.18.5077-5087.2002 · DOI
  20. Hogg, 2004, Conformational antagonism between opposing active sites in a bifunctional RelA/SpoT homolog modulates (p)ppGpp metabolism during the stringent response, Cell, 117, 57, 10.1016/S0092-8674(04)00260-0 · DOI · Paper page
  21. Ishii, 2000, Deletion of the yhhP gene results in filamentous cell morphology in Escherichia coli, Biosci. Biotechnol. Biochem., 64, 799, 10.1271/bbb.64.799 · DOI
  22. Kang, 1990, Identification and characterization of a new Escherichia coli gene that is a dosage-dependent suppressor of a dnaK deletion mutation, J. Bacteriol., 172, 2055, 10.1128/jb.172.4.2055-2064.1990 · DOI
  23. Murray, 2004, Unique roles of the rrn P2 rRNA promoters in Escherichia coli, Mol. Microbiol., 52, 1375, 10.1111/j.1365-2958.2004.04060.x · DOI
  24. Murray, 2003, Regulation of the Escherichia coli rrnB P2 promoter, J. Bacteriol., 185, 28, 10.1128/JB.185.1.28-34.2003 · DOI
  25. Perederina, 2004, Regulation through the secondary channel—structural framework for ppGpp-DksA synergism during transcription, Cell, 118, 297, 10.1016/j.cell.2004.06.030 · DOI · Paper page
  26. Sands, 1952, The effects of a tryptophan-histidine deficiency in a mutant of Escherichia coli, J. Bacteriol., 63, 505, 10.1128/jb.63.4.505-511.1952 · DOI
  27. Schaechter, 1958, Dependency on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium, J. Gen. Microbiol., 19, 592, 10.1099/00221287-19-3-592 · DOI · Paper page
  28. Schneider, 2003, Changes in Escherichia coli rRNA promoter activity correlate with changes in initiating nucleoside triphosphate and guanosine 5′ diphosphate 3′-diphosphate concentrations after induction of feedback control of ribosome synthesis, J. Bacteriol., 185, 6185, 10.1128/JB.185.20.6185-6191.2003 · DOI
  29. Schneider, 2004, Relationship between growth rate and ATP concentration in Escherichia coli, J. Biol. Chem., 279, 8262, 10.1074/jbc.M311996200 · DOI · Paper page
  30. Schneider, 2002, NTP-sensing by rRNA promoters in Escherichia coli is direct, Proc. Natl. Acad. Sci. USA, 99, 8602, 10.1073/pnas.132285199 · DOI
  31. Schneider, 2003, Measuring control of transcription initiation by changing concentrations of nucleotides and their derivatives, Methods Enzymol., 370, 606, 10.1016/S0076-6879(03)70051-2 · DOI
  32. Schneider, 2003, Control of rRNA expression in Escherichia coli, Curr. Opin. Microbiol., 6, 151, 10.1016/S1369-5274(03)00038-9 · DOI
  33. Stephens, 1975, Guanosine 5′-diphosphate 3′-diphosphate (ppGpp), Proc. Natl. Acad. Sci. USA, 72, 4389, 10.1073/pnas.72.11.4389 · DOI
  34. Turner, 1998, Identification of Salmonella typhimurium genes required for colonization of the chicken alimentary tract and for virulence in newly hatched chicks, Infect. Immun., 66, 2099, 10.1128/IAI.66.5.2099-2106.1998 · DOI
  35. Webb, 1999, Effects of DksA and ClpP protease on sigma S production and virulence in Salmonella typhimurium, Mol. Microbiol., 34, 112, 10.1046/j.1365-2958.1999.01581.x · DOI
  36. Xiao, 1991, Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations, J. Biol. Chem., 266, 5980, 10.1016/S0021-9258(19)67694-5 · DOI · Paper page
  37. Zhou, 1998, The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like “stringent” RNA polymerases in Escherichia coli, Proc. Natl. Acad. Sci. USA, 95, 2908, 10.1073/pnas.95.6.2908 · DOI · Paper page

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Metadata

Authors
Paul, B. J., Barker, M. M., Ross, W., Schneider, D. A., Webb, C., Foster, J. W., & Gourse, R. L.
Venue
Cell
Publisher
Elsevier BV
Published
2004-08
Volume
118
Issue
3
Pages
311-322
ISSN
0092-8674 (ISSN-L)
DOI
10.1016/j.cell.2004.07.009
OpenAlex
W2146120613
Cited by
479
References
2
FWCI
13.97
Type
journal article
Language
en
Open access
bronze
Licence

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CoChat. (2026). Citation check: DksA. https://app.cochat.ai/papers/10.1016/j.cell.2004.07.009
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Paul, B. J., Barker, M. M., Ross, W., Schneider, D. A., Webb, C., Foster, J. W., & Gourse, R. L. (2004). DksA. Cell. https://doi.org/10.1016/j.cell.2004.07.009

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.