The HAMP Domain Structure Implies Helix Rotation in Transmembrane Signaling

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Items 301–400 of 415

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    Iain C. Clark, Bruk Mensa, Christopher J. Ochs, Nathan W. Schmidt, Marco Mravic, Francisco Javier Quintana, William F. DeGrado, Adam R. Abate · 2021 · Proceedings of the National Academy of Sciences
  2. New Roles for HAMP Domains: the Tri-HAMP Region of Pseudomonas aeruginosa Aer2 Controls Receptor Signaling and Cellular Localization
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  3. Insights into the immune manipulation mechanisms of pollen allergens by protein domain profiling
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  4. A chemoreceptor conformational equilibrium controlled by signaling inputs
    Mikaila C. Hoffman, Mingshan Li, Gerald L. Hazelbauer, Gabriela S. Schlau‐Cohen · 2025 · Proceedings of the National Academy of Sciences
  5. Functional dissection of individual domains in group III histidine kinase Sshk1p from the phytopathogenic fungus Sclerotinia sclerotiorum
    Tao Li, Qian Xiu, Qiao Wang, Jianxin Wang, Yabing Duan, Mingguo Zhou · 2021 · Pesticide Biochemistry and Physiology
  6. Bacterial cell wall research in Tübingen: A brief historical account
    Volkmar Braun · 2014 · International Journal of Medical Microbiology
  7. Role of the F1 Region in theEscherichia coliAerotaxis Receptor Aer
    Asharie J. Campbell, Kylie J. Watts, Mark S. Johnson, Barry L. Taylor · 2010 · Journal of Bacteriology
  8. Sensors and Signal Transducers of Environmental Stress in Cyanobacteria
    Yu Kanesaki, Dmitry A. Los, Iwane Suzuki, Norio Murata · 2009 · Springer eBooks
  9. Conformational states of HAMP domains interacting with sensory rhodopsin membrane systems: an integrated all-atom and coarse-grained molecular dynamics simulation approach
    Bikash Ranjan Sahoo, Toshimichi Fujiwara · 2016 · Molecular BioSystems
  10. Structure and function of the juxtamembrane GAF domain of potassium biosensor KdpD
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  11. Bacterial Chemoreceptors Transmit Stimulus Signals Through Coupled Entropic Switches
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  12. Cervimycin-Resistant Staphylococcus aureus Strains Display Vancomycin-Intermediate Resistant Phenotypes
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  13. Playing with transmembrane signals.
    Larisa E. Cybulski, Diego de Mendoza · 2011 · Europe PMC (PubMed Central)
  14. The Blue-Green Sensory Rhodopsin SRM from Haloarcula marismortui Attenuates Both Phototactic Responses Mediated by Sensory Rhodopsin I and II in Halobacterium salinarum
    Jheng-Liang Chen, Yu-Cheng Lin, Hsu‐Yuan Fu, Chii‐Shen Yang · 2019 · Scientific Reports
  15. A mutational wrench in the HAMP gearbox
    Michael D. Manson · 2009 · Molecular Microbiology
  16. Assessment of the Topology and Oligomerisation States of Coiled Coils Using Metadynamics with Conformational Restraints
    Notari, Evangelia, Wood, Christopher W., Michel, Julien · 2025 · Journal of Chemical Theory and Computation
  17. Not too loose, not too tight – just right. Biphasic control of the Tsr HAMP domain
    Michael D. Manson · 2011 · Molecular Microbiology
  18. Histidine Kinases in Two-Component Signaling Pathways
    Alla O. Kaserer, Ann H. West · 2010 · Elsevier eBooks
  19. Crystallization and preliminary X-ray diffraction analysis of the periplasmic domain of theEscherichia coliaspartate receptor Tar and its complex with aspartate
    Takeshi Mise, Hideyuki Matsunami, Fadel A. Samatey, ICHIRO N. MARUYAMA · 2014 · Acta Crystallographica Section F Structural Biology Communications
  20. Biochemical characterization of the tandem HAMP domain from N atronomonas pharaonis as an intraprotein signal transducer
    Janani Natarajan, Anita Charlotte Friderun Schultz, Ursula Kurz, Joachim Erdmann Schultz · 2014 · FEBS Journal
  21. Structural features of the two-component system LisR/LisK suggests multiple responses for the adaptation and survival of Listeria monocytogenes
    Nelson Enrique Arenas, Andrés Gutiérrez Escobar, Myriam Sánchez-Gómez, Luz Mary Salazar, Edgar Antonio Reyes-Montaño · 2013 · Universitas Scientiarum
  22. Modification in hydrophobic packing of HAMP domain induces a destabilization of the auto‐phosphorylation site in the histidine kinase CpxA
    Marlet Martinez, Nathalie Duclert‐Savatier, Jean‐Michel Betton, Pedro M. Alzari, Michaël Nilges, Thérèse E. Malliavin · 2016 · Biopolymers
  23. In vivo cross-linking and transmembrane helix dynamics support a bidirectional non-piston model of signaling within E. coli EnvZ
    Rahmi Yusuf, Tuyết Linh Nguyễn, Annika Heininger, Robert J. Lawrence, Benjamin A. Hall, Roger R. Draheim · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  24. Transmembrane Signaling
    Melinda D. Baker, Matthew B. Neiditch · 2009
  25. Conformation control of the histidine kinase BceS of Bacillus subtilis by its cognate ABC-transporter facilitates need-based activation of antibiotic resistance
    Alan Koh, Marjorie J. Gibbon, Marc W. Van der Kamp, Christopher R. Pudney, Susanne Gebhard · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  26. Caractérisation de "Thiomonas arsenitoxydans" et étude de la régulation des gènes codant pour l'arsénite oxydase
    Djamila Slyemi · 2010 · theses.fr (ABES)
  27. Interplay between Conformational Heterogeneity and Hydration in the Folding Landscape of a Designed Three-Helix Bundle
    Gregory Custer, Payel Das, Silvina Matysiak · 2017 · The Journal of Physical Chemistry B
  28. Structural and biophysical characterization of the cytoplasmic domains of HprS kinase and its interactions with the cognate regulator HprR
    Anna Koczurowska, David Ruiz Carrillo, María García-Alai, Małgorzata Zakłos‐Szyda, Grzegorz Bujacz, Agnieszka J. Pietrzyk‐Brzezinska · 2024 · Archives of Biochemistry and Biophysics
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    P. J. Jazleena, Apurba Das, Annick Guiseppi, Fabian Debard, Jaya Sharma, Mutum Yaikhomba, Tâm Mignot, Emilia M. F. Mauriello, Pananghat Gayathri · 2025 · mBio
  31. Upward mobility and alternative lifestyles: a report from the 10th biennial meeting on Bacterial Locomotion and Signal Transduction
    Birgit E. Scharf, Phillip D. Aldridge, John R. Kirby, Brian R. Crane · 2009 · Molecular Microbiology
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    Kamalakkannan Srinivasan, Thangaiah Subramanian, H. Peter Spielmann, Chris Janetopoulos · 2013 · Molecular and Cellular Biochemistry
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    Ana Laura Ramos, Maria Aquino, Gema García, Miriam Gaspar, Cristina de la Cruz, Anaid Saavedra‐Flores, Susana Brom, Ramón Cervantes-Rivera, Clara E. Galindo‐Sánchez, Rufina Hernández-Martínez et al. · 2022 · Frontiers in Microbiology
  34. Regulatory Systems: Two-Component
    Tracy L. Raivio · 2019 · European Lisp Symposium
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    Lucija Ostojić, Daniel Sarabi, Robert Bosman, Giorgia Ortolani, Swagatha Ghosh, Martin Nors Pedersen, Mathias Sander, Petra Båth, Greger Hammarin, Robert H. Dods et al. · 2026 · Structure
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    Kwon Joo Yeo, Jin-Wan Park, Eun‐Hee Kim, Eunha Hwang, Hae‐Kap Cheong · 2014 · Process Biochemistry
  38. Playing with transmembrane signals
    Larisa E. Cybulski, Diego de Mendoza · 2011 · Communicative & Integrative Biology
  39. Conformational sampling of CpxA: Connecting HAMP motions to the histidine kinase function
    Nathalie Duclert‐Savatier, Guillaume Bouvier, Michaël Nilges, Thérèse E. Malliavin · 2018 · PLoS ONE
  40. Bacterial histidine kinases as potential antibacterial drug targets
    Vishakha Singh, Poonam Dhankhar, Pravindra Kumar · 2022 · Elsevier eBooks
  41. PhoQ: Structural and Mechanistic Investigations into an Important Bacterial Sensor Kinase
    Graham D Clinthorne · 2012 · ScholarlyCommons (University of Pennsylvania)
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    Orr Ashenberg · 2012 · DSpace@MIT (Massachusetts Institute of Technology)
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    Victor Sourjik · 2009
  44. Bioinformatics Methods for NMR Chemical Shift Data
    Simon Ginzinger · 2008 · Electronic Theses of LMU Munich (Ludwig-Maximilians-Universität München)
  45. The Use of Chloroform.
    J Stewart · 1926 · PubMed Central
  46. The role of protein-membrane interactions in modulation of signaling by bacterial chemoreceptors
    Roger R. Draheim · 2009 · OakTrust (Texas A&M University Libraries)
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    Christopher P. Randall · 2013 · White Rose eTheses Online (University of Leeds, The University of Sheffield, University of York)
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    Mohammed El‐Mowafy · 2013 · Digitale Bibliothek Braunschweig (Verbundzentrale Göttingen (VZG))
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    Wenxin Hu, Chance Parkinson, Hongjin Zheng · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
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    Lu Guo, Yun‐Hao Wang, Rui Cui, Zhou Huang, Hong Yuan, Jia-Wei Qian, Bin Ni, Anming Xu, Cheng‐Ying Jiang, Igor B. Zhulin et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  51. Atomic insights into the signaling landscape of E. coli PhoQ Histidine Kinase from Molecular Dynamics simulations
    Symela Lazaridi, Jing Yuan, Thomas Lemmin · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  52. Atomic insights into the signaling landscape of E. coli PhoQ Histidine Kinase from Molecular Dynamics simulations
    Symela Lazaridi, Jing Yuan, Thomas Lemmin · 2024 · Research Square
  53. Characterization of CETA and CETB, Energy Taxis Regulators in Campylobacter jejuni.
    Kathryn T. Young · 2008 · Deep Blue (University of Michigan)
  54. Signaling between Two Sensor Kinases Controls Biofilms and Host Colonization in a Bacterial Symbiont
    Allison N. Norsworthy · 2015 · Loyola eCommons (Loyola University of Chicago)
  55. Comparative Genomics of Microbial Chemoreceptor Sequence, Structure, and Function
    Aaron D. Fleetwood · 2014
  56. Sensory Rhodopsin II: Signal Development and Transduction
    Georg Büldt, Valentin Gordeliy, Johann P. Klare, Martin Engelhard · 2012 · Springer eBooks
  57. Mechanism and specificity of bacterial two-component signaling systems
    Emma A. Lubin · 2010 · DSpace@MIT (Massachusetts Institute of Technology)
  58. Connectable components for protein design
    Gabriel González · 2013 · ScholarlyCommons (University of Pennsylvania)
  59. NMR structural studies on the periplasmic domain of CitA and DcuS.
    Vinesh Vijayan · 2007
  60. In silico characterization of three two-component systems of Ehrlichia canis and evaluation of a natural plant-derived inhibitor
    Elaine Vieira Santos, GABRIEL HENRIQUE DE OLIVEIRA SILVA, Giovana P. Cardozo, Tamires A. Bitencourt, Suzelei de Castro França, Ana Lúcia Fachin, Mozart Marins · 2012 · Genetics and Molecular Research
  61. A combination of novel solid-state NMR methods and related software to study molecular assemblies and biomolecules
    Sabine Gradmann · 2013 · Utrecht University Repository (Utrecht University)
  62. Characterization of c-di-GMP signaling in Salmonella typhimurium
    Roger Simm · 2007 · Figshare
  63. The Transmembrane Signaling in Chimeras of the E.coli Chemotaxis Receptors and Bacterial Class III Adenylyl cyclases
    Kajal Kanchan · 2011
  64. Unorthodoxe Mechanismen der Regulation innerhalb von Zweikomponentensystemen in Escherichia coli
    Susan Busse · 2010 · Universitätsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver
  65. This article is published as part of a themed issue of Photochemical & Photobiological Sciences on Photofunctional proteins: from understanding to engineering
    Stefania Abbruzzetti, Ranieri Bizzarri, Stefano Luin, Riccardo Nifosı̀, Barbara Storti, Cristiano Viappiani, Fabio Beltram · 2010
  66. Signaling Mechanisms of HAMP Domains in Chemoreceptors
    Sensor Kinases, John S. Parkinson · 2010
  67. Upward mobility and alternative lifestyles: a report from the 10th biennial meeting on Bacterial Locomotion and
    Birgit E. Scharf, Phillip D. Aldridge, John R. Kirby, Brian R. Crane, David R. Zusman, John S. Parkinson, Michael D. Manson · 2009
  68. Independence and interdependence: signal transduction of two chemosensory receptors important for the regulation of gliding motility in Myxococcus xanthus
    Xuhong Qian, Thomas J. Inzana, David L. Popham, Ann M. Stevens, Richard A. Walker · 2007 · VTechWorks (Virginia Tech)
  69. Estudo de proteínas GGDEF-EAL em vias de sinalização de c-di-GMP em Xanthomonas citri subsp. citri
    Raphael Dias Teixeira · 2015 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
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    Steven Randolph Cockerell · 2014 · NC Digital Online Collection of Knowledge and Scholarship (The University of North Carolina at Greensboro)
  71. Untersuchung der Struktur und Funktion von Sieben-Helix-Membranrezeptoren
    Swetlana Martell · 2008 · Technische Universität Dortmund Eldorado (Technische Universität Dortmund)
  72. The Study on a Novel Light-driven Sodium Pump and Creation of New Functional Molecules
    Keiichi Inoue · 2016 · Molecular Science
  73. Control of serine receptor signaling by the sensory adaptation system in escherichia coli
    Xuesheng Han · 2016 · J. Willard Marriott Library
  74. Structure and conformational signaling in the escherichia coli aspartate receptor tar
    Nicholas L. Bartelli · 2014
  75. Estudos estruturais e funcionais de STM3615 de Salmonella enterica: uma proteína contendo ambos os domínios GGDEF-EAL envolvidos na biossíntese de c-di-GMP
    Flávio Rodolfo Rosseto · 2017
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  77. Synecdoche, two-component systems : E. coli EnvZ/OmpR as a model of transmembrane communication and chimeric biosensor design
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  78. Análisis del rol de proteínas tipo Lap en la formación de biofilm de Bordetella bronchiseptica
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  79. Estudos sobre a regulação dos transdutores de sinal PA0847 e HsbD de Pseudomonas aeruginosa e sobre sistemas GGDEF e EAL em tandem
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  80. Caracterização funcional de sistemas de dois componentes em Xanthomonas citri
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  81. Structural Studies on Transmembrane Signalling Mechanism of Histidine Kinase CitA
    Michele Salvi · 2019
  82. Structural insights into membrane protein interactions and signalling
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  83. Using TraDIS to probe the model organism Escherichia coli
    Emily C. A. Goodall · 2019 · University of Birmingham Institutional Research Archive (University of Birmingham)
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  85. NMR Investigations of Peptide-Membrane Interactions, Modulation of Peptide-Lipid Interaction as a Switch in Signaling across the Lipid Bilayer
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  86. Investigation of the Roles of CheD in the Bacillus Subtilis Chemotactic Signal Transduction
    Wei Yuan · 2009 · Illinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign)
  87. Bases moleculares de la especificidad en el mecanismo de transducción de señal en los sistemas de dos componentes bacterianos
    Cristina Mideros Mora · 2021
  88. Bacterial chemoperception during the plant infection process
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  89. Faculty Opinions recommendation of Engineered socket study of signaling through a four-helix bundle: evidence for a yin-yang mechanism in the kinase control module of the aspartate receptor.
    George Ordal · 2009 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  90. Cyclic AMP Signaling in Mycobacteria
    Gwendowlyn S. Knapp, Kathleen A. McDonough · 2015 · ASM Press eBooks
  91. Intramembrane signal transduction and cell envelope stress response in Bacillus subtilis
    Sina Jordan · 2008
  92. Sensory Rhodopsin II: Signal Development and Transduction
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  93. WITHDRAWN: Signal Transduction and Kinase Control in Nanodisc-Reconstituted E. coli Aerotaxis Receptor
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    Clara Galvez‐Roldán · 2023
  95. Di-HAMP domains of a cytoplasmic chemoreceptor modulate nucleoid array formation and downstream signalling
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  96. Assessment of the Topology and OligomerisationStates of Coiled Coils Using Metadynamics withConformational Restraints
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  97. Molecular mechanisms of signal transduction in two-component signaling systems
    Andrii Ishchenko · 2013 · RWTH Publications (RWTH Aachen)
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